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In a primate sample (siamang) using verkko v1.4, we end up with a bubble structure
where there are two alternate 100kb nodes in a single haplotype. Both nodes have normal coverage so they don't appear to be somatic variation. The region in the HiFi-only graph
seems to indicate this is due to a duplication and there is no evidence of somatic variation. The assembly is in globus under gibbon_bad_resolution.
The text was updated successfully, but these errors were encountered:
In a primate sample (siamang) using verkko v1.4, we end up with a bubble structure
where there are two alternate 100kb nodes in a single haplotype. Both nodes have normal coverage so they don't appear to be somatic variation. The region in the HiFi-only graph
seems to indicate this is due to a duplication and there is no evidence of somatic variation. The assembly is in globus under gibbon_bad_resolution.
The text was updated successfully, but these errors were encountered: