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Freebayes implementation missing? #47

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sconlan opened this issue May 17, 2018 · 1 comment
Open

Freebayes implementation missing? #47

sconlan opened this issue May 17, 2018 · 1 comment
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@sconlan
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sconlan commented May 17, 2018

The manuscript mentions, "Base quality is optionally determined using FreeBayes [54] to measure read support and mixed alleles."

I don't see that option in the v1.2 command line options. Also, I can't find a FreeBayes "wrapper" in the python script. In contrast, there are "run_phipack" and "run_fasttree" routines defined.
@evezeyl
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evezeyl commented Jul 8, 2019

Also interested in this option

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@bkille @sconlan @evezeyl