From cdb4bebb282ff4607038d5a3eb8d4590b250eee0 Mon Sep 17 00:00:00 2001 From: Bryce Lorenz Kille Date: Tue, 19 Nov 2024 14:55:23 -0600 Subject: [PATCH] More recruitment --> filtering renames --- parsnp | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/parsnp b/parsnp index 5436c0b..fb7c126 100755 --- a/parsnp +++ b/parsnp @@ -1349,7 +1349,7 @@ SETTINGS: finalfiles = [] auto_ref = "" if not curated and not args.skip_ANI_filter: - logger.info("Recruiting genomes...") + logger.info("Filtering genomes...") if use_parsnp_mumi: if not inifile_exists: command = f"{PARSNP_DIR}/bin/parsnp_core {outputDir}/config/all_mumi.ini" @@ -1464,7 +1464,7 @@ SETTINGS: # shutil.rmtree(tmp_dir) except subprocess.CalledProcessError as e: logger.critical( - "Recruitment failed with exception {}. More details may be found in the *.err output log".format(str(e))) + "Filtering failed with exception {}. More details may be found in the *.err output log".format(str(e))) # shutil.rmtree(tmp_dir) allfiles.extend(finalfiles)