diff --git a/README.md b/README.md index 9a37344..badbee2 100644 --- a/README.md +++ b/README.md @@ -39,20 +39,19 @@ You must have 8GB or more memory to allocate to the JVM (used by pilon). --Output folder contains the following files: 1) metacompass_output folder: - Assembled contigs: + - Assembled contigs: metacompass_output/metacompass.final.ctg.fa - Selected Reference genomes sequences: + - Selected Reference genomes sequences: metacompass_output/metacompass.recruited.fa - Selected Reference genomes ids and taxonomy ids + - Selected Reference genomes ids and taxonomy ids metacompass_output/metacompass.recruited.ids - 2) Assembly information - metacompass.tsv file with the following information: - -contig ID - -contig size - -reference genome used (only reference-guided assembled contigs) - -start and end position in the genome where contig originates from - -taxonomic label of the genome - -name of the genome + 2) metacompass.tsv file with the following information: + - contig ID + - contig size + - reference genome used (only reference-guided assembled contigs) + - start and end position in the genome where contig originates from + - taxonomic label of the genome + - name of the genome # EXAMPLES