From 2a39d3186c97fc2c4499b8b342ef5b3812571805 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Arne=20K=C3=BCderle?= <a.kuederle@gmail.com>
Date: Fri, 10 Mar 2023 13:19:42 +0100
Subject: [PATCH] Removed pydantic and created custom config logic

---
 gaitmap_datasets/_config.py |  90 +++---
 poetry.lock                 | 544 +++++++++++++++++-------------------
 pyproject.toml              |   1 -
 3 files changed, 288 insertions(+), 347 deletions(-)

diff --git a/gaitmap_datasets/_config.py b/gaitmap_datasets/_config.py
index 0e89320..127579f 100644
--- a/gaitmap_datasets/_config.py
+++ b/gaitmap_datasets/_config.py
@@ -1,60 +1,49 @@
 """Utils to manage the configuration of the datasets path."""
 import json
+from dataclasses import dataclass, fields
 from pathlib import Path
-from typing import Any, ClassVar, Dict, Optional, Tuple, Union
+from typing import Optional, Union
 
-from pydantic import BaseSettings, DirectoryPath
-from pydantic.env_settings import SettingsSourceCallable
+from typing_extensions import Self
 
+_GLOBAL_CONFIG: Optional["DatasetsConfig"] = None
+_DEFAULT_CONFIG_FILE = (Path(__file__).parent.parent / ".datasets.dev.json").resolve()
 
-def json_config_settings_source(settings: BaseSettings) -> Dict[str, Any]:
-    """Get config data from json file."""
-    config_file = getattr(settings.__config__, "config_file", None)
-    using_default = False
-    if config_file is None:
-        config_file = getattr(settings.__config__, "default_config_file", None)
-        using_default = True
-    try:
-        with Path(config_file).open(encoding="utf8") as f:
-            return json.load(f)["datasets"]
-    except FileNotFoundError as e:
-        if using_default:
-            return {}
-        raise ValueError(f"Config file {config_file} not found.") from e
 
-
-class DatasetsConfig(BaseSettings):
+@dataclass
+class DatasetsConfig:
     """Configuration class for the dataset paths."""
 
-    egait_parameter_validation_2013: Optional[DirectoryPath]
-    sensor_position_comparison_2019: Optional[DirectoryPath]
-    egait_segmentation_validation_2014: Optional[DirectoryPath]
-    pyshoe_2019: Optional[DirectoryPath]
-    egait_adidas_2014: Optional[DirectoryPath]
-    stair_ambulation_healthy_2021: Optional[DirectoryPath]
-
-    class Config:
-        """The config."""
-
-        config_file: ClassVar[str]
-        default_config_file: ClassVar[str] = (Path(__file__).parent.parent / ".datasets.dev.json").resolve()
-        validate_assignment = True
-
-        @classmethod
-        def customise_sources(
-            cls,
-            init_settings: SettingsSourceCallable,
-            env_settings: SettingsSourceCallable,  # noqa: ARG003
-            file_secret_settings: SettingsSourceCallable,  # noqa: ARG003
-        ) -> Tuple[SettingsSourceCallable, ...]:
-            """Customize the sources."""
-            return init_settings, json_config_settings_source
-
-
-_GLOBAL_CONFIG: Optional[DatasetsConfig] = None
-
-
-def set_config(config_obj_or_path: Union[str, Path, DatasetsConfig] = DatasetsConfig()):
+    egait_parameter_validation_2013: Optional[Path] = None
+    sensor_position_comparison_2019: Optional[Path] = None
+    egait_segmentation_validation_2014: Optional[Path] = None
+    pyshoe_2019: Optional[Path] = None
+    egait_adidas_2014: Optional[Path] = None
+    stair_ambulation_healthy_2021: Optional[Path] = None
+
+    def __post_init__(self):
+        for field in fields(self):
+            value = getattr(self, field.name)
+            if value is not None:
+                value = Path(value)
+                if not value.is_dir():
+                    raise ValueError(f"Path {value} for {field.name} is not a directory.")
+                setattr(self, field.name, value)
+
+    @classmethod
+    def from_json(cls, config_file: Union[Path, str] = _DEFAULT_CONFIG_FILE) -> Self:
+        """Get config data from json file."""
+        using_default = config_file == _DEFAULT_CONFIG_FILE
+        try:
+            with Path(config_file).open(encoding="utf8") as f:
+                return DatasetsConfig(**{k: Path(v) if v else v for k, v in json.load(f)["datasets"].items()})
+        except FileNotFoundError as e:
+            if using_default:
+                return DatasetsConfig()
+            raise ValueError(f"Config file {config_file} not found.") from e
+
+
+def set_config(config_obj_or_path: Union[str, Path, DatasetsConfig] = _DEFAULT_CONFIG_FILE):
     """Set the global config object containing configured paths for the datasets.
 
     This allows you to set a global configuration that is automatically used by the dataset classes.
@@ -75,8 +64,7 @@ def set_config(config_obj_or_path: Union[str, Path, DatasetsConfig] = DatasetsCo
     if _GLOBAL_CONFIG is not None:
         raise ValueError("Config is already set!")
     if isinstance(config_obj_or_path, (str, Path)):
-        DatasetsConfig.Config.config_file = Path(config_obj_or_path)
-        config_obj = DatasetsConfig()
+        config_obj = DatasetsConfig.from_json(config_obj_or_path)
     elif isinstance(config_obj_or_path, DatasetsConfig):
         config_obj = config_obj_or_path
     else:
@@ -128,7 +116,7 @@ def create_config_template(path: Union[str, Path]):
         raise ValueError(f"Config file {path} already exists.")
 
     with path.open("w", encoding="utf8") as f:
-        json.dump({"datasets": {k: None for k in DatasetsConfig.__fields__}}, f, indent=4, sort_keys=True)
+        json.dump({"datasets": {k.name: None for k in fields(DatasetsConfig)}}, f, indent=4, sort_keys=True)
 
     print(f"Created config template at {path.resolve()}.")
 
diff --git a/poetry.lock b/poetry.lock
index 1537d64..ef2a8b1 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -33,18 +33,18 @@ tests-no-zope = ["cloudpickle", "cloudpickle", "hypothesis", "hypothesis", "mypy
 
 [[package]]
 name = "babel"
-version = "2.11.0"
+version = "2.12.1"
 description = "Internationalization utilities"
 category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 files = [
-    {file = "Babel-2.11.0-py3-none-any.whl", hash = "sha256:1ad3eca1c885218f6dce2ab67291178944f810a10a9b5f3cb8382a5a232b64fe"},
-    {file = "Babel-2.11.0.tar.gz", hash = "sha256:5ef4b3226b0180dedded4229651c8b0e1a3a6a2837d45a073272f313e4cf97f6"},
+    {file = "Babel-2.12.1-py3-none-any.whl", hash = "sha256:b4246fb7677d3b98f501a39d43396d3cafdc8eadb045f4a31be01863f655c610"},
+    {file = "Babel-2.12.1.tar.gz", hash = "sha256:cc2d99999cd01d44420ae725a21c9e3711b3aadc7976d6147f622d8581963455"},
 ]
 
 [package.dependencies]
-pytz = ">=2015.7"
+pytz = {version = ">=2015.7", markers = "python_version < \"3.9\""}
 
 [[package]]
 name = "beautifulsoup4"
@@ -133,100 +133,87 @@ files = [
 
 [[package]]
 name = "charset-normalizer"
-version = "3.0.1"
+version = "3.1.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 category = "dev"
 optional = false
-python-versions = "*"
-files = [
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@@ -348,63 +335,63 @@ test-no-images = ["pytest"]
 
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 [package.dependencies]
@@ -454,18 +441,18 @@ test = ["pytest (>=6)"]
 
 [[package]]
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+version = "4.39.0"
 description = "Tools to manipulate font files"
 category = "dev"
 optional = false
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 [package.extras]
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 graphite = ["lz4 (>=1.7.4.2)"]
 interpolatable = ["munkres", "scipy"]
 lxml = ["lxml (>=4.0,<5)"]
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 symfont = ["sympy"]
 type1 = ["xattr"]
 ufo = ["fs (>=2.2.0,<3)"]
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+unicode = ["unicodedata2 (>=15.0.0)"]
 woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"]
 
 [[package]]
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 perf = ["ipython"]
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+[[package]]
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+version = "5.12.0"
+description = "Read resources from Python packages"
+category = "dev"
+optional = false
+python-versions = ">=3.7"
+files = [
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+
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+
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+
 [[package]]
 name = "imucal"
 version = "2.3.1"
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 [package.dependencies]
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 cycler = ">=0.10"
 fonttools = ">=4.22.0"
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 pillow = ">=6.2.0"
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 python-dateutil = ">=2.7"
 
 [[package]]
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 [[package]]
 name = "platformdirs"
-version = "3.0.0"
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 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
 category = "dev"
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 python-versions = ">=3.7"
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 [[package]]
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 version = "0.12.0"
@@ -1245,14 +1199,14 @@ diagrams = ["jinja2", "railroad-diagrams"]
 
 [[package]]
 name = "pytest"
-version = "7.2.1"
+version = "7.2.2"
 description = "pytest: simple powerful testing with Python"
 category = "dev"
 optional = false
 python-versions = ">=3.7"
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 ]
 
 [package.dependencies]
@@ -1380,33 +1334,33 @@ files = [
 
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 description = "A set of python modules for machine learning and data mining"
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 ]
 
 [package.dependencies]
@@ -1486,14 +1440,14 @@ files = [
 
 [[package]]
 name = "soupsieve"
-version = "2.3.2.post1"
+version = "2.4"
 description = "A modern CSS selector implementation for Beautiful Soup."
 category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 files = [
-    {file = "soupsieve-2.3.2.post1-py3-none-any.whl", hash = "sha256:3b2503d3c7084a42b1ebd08116e5f81aadfaea95863628c80a3b774a11b7c759"},
-    {file = "soupsieve-2.3.2.post1.tar.gz", hash = "sha256:fc53893b3da2c33de295667a0e19f078c14bf86544af307354de5fcf12a3f30d"},
+    {file = "soupsieve-2.4-py3-none-any.whl", hash = "sha256:49e5368c2cda80ee7e84da9dbe3e110b70a4575f196efb74e51b94549d921955"},
+    {file = "soupsieve-2.4.tar.gz", hash = "sha256:e28dba9ca6c7c00173e34e4ba57448f0688bb681b7c5e8bf4971daafc093d69a"},
 ]
 
 [[package]]
@@ -1705,14 +1659,14 @@ torch = ["torch (>=1.6.0)"]
 
 [[package]]
 name = "tqdm"
-version = "4.64.1"
+version = "4.65.0"
 description = "Fast, Extensible Progress Meter"
 category = "main"
 optional = false
-python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7"
+python-versions = ">=3.7"
 files = [
-    {file = "tqdm-4.64.1-py2.py3-none-any.whl", hash = "sha256:6fee160d6ffcd1b1c68c65f14c829c22832bc401726335ce92c52d395944a6a1"},
-    {file = "tqdm-4.64.1.tar.gz", hash = "sha256:5f4f682a004951c1b450bc753c710e9280c5746ce6ffedee253ddbcbf54cf1e4"},
+    {file = "tqdm-4.65.0-py3-none-any.whl", hash = "sha256:c4f53a17fe37e132815abceec022631be8ffe1b9381c2e6e30aa70edc99e9671"},
+    {file = "tqdm-4.65.0.tar.gz", hash = "sha256:1871fb68a86b8fb3b59ca4cdd3dcccbc7e6d613eeed31f4c332531977b89beb5"},
 ]
 
 [package.dependencies]
@@ -1726,14 +1680,14 @@ telegram = ["requests"]
 
 [[package]]
 name = "typing-extensions"
-version = "4.4.0"
+version = "4.5.0"
 description = "Backported and Experimental Type Hints for Python 3.7+"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "typing_extensions-4.4.0-py3-none-any.whl", hash = "sha256:16fa4864408f655d35ec496218b85f79b3437c829e93320c7c9215ccfd92489e"},
-    {file = "typing_extensions-4.4.0.tar.gz", hash = "sha256:1511434bb92bf8dd198c12b1cc812e800d4181cfcb867674e0f8279cc93087aa"},
+    {file = "typing_extensions-4.5.0-py3-none-any.whl", hash = "sha256:fb33085c39dd998ac16d1431ebc293a8b3eedd00fd4a32de0ff79002c19511b4"},
+    {file = "typing_extensions-4.5.0.tar.gz", hash = "sha256:5cb5f4a79139d699607b3ef622a1dedafa84e115ab0024e0d9c044a9479ca7cb"},
 ]
 
 [[package]]
@@ -1755,21 +1709,21 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
 
 [[package]]
 name = "zipp"
-version = "3.12.1"
+version = "3.15.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "zipp-3.12.1-py3-none-any.whl", hash = "sha256:6c4fe274b8f85ec73c37a8e4e3fa00df9fb9335da96fb789e3b96b318e5097b3"},
-    {file = "zipp-3.12.1.tar.gz", hash = "sha256:a3cac813d40993596b39ea9e93a18e8a2076d5c378b8bc88ec32ab264e04ad02"},
+    {file = "zipp-3.15.0-py3-none-any.whl", hash = "sha256:48904fc76a60e542af151aded95726c1a5c34ed43ab4134b597665c86d7ad556"},
+    {file = "zipp-3.15.0.tar.gz", hash = "sha256:112929ad649da941c23de50f356a2b5570c954b65150642bccdd66bf194d224b"},
 ]
 
 [package.extras]
 docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["flake8 (<5)", "func-timeout", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
+testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
 
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.8,<4.0"
-content-hash = "e5a1bc2f964516c562aeace44827cdf8a88a1ea30f7ad412caa556fc44136a8c"
+content-hash = "57e5c71b228f3faefcdec6f2ddff28e1476fe4752eaec61e082e2ae74f4a699a"
diff --git a/pyproject.toml b/pyproject.toml
index 078790b..40f52fa 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -21,7 +21,6 @@ imucal = ">=2.3.0"
 nilspodlib = ">=3.6.0"
 scipy = ">=1.8.1"
 c3d = "^0.5.1"
-pydantic = "^1.10.4"
 
 [tool.poetry.group.dev.dependencies]
 poethepoet = "^0.14.0"