packages.bib

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2023},
  url = {https://www.R-project.org/},
}

@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller and Davis Vaughan},
  year = {2023},
  note = {R package version 1.1.4},
  url = {https://dplyr.tidyverse.org},
}

@Manual{R-forcats,
  title = {forcats: Tools for Working with Categorical Variables (Factors)},
  author = {Hadley Wickham},
  year = {2023},
  note = {R package version 1.0.0, 
https://github.com/tidyverse/forcats},
  url = {https://forcats.tidyverse.org/},
}

@Manual{R-geomtextpath,
  title = {geomtextpath: Curved Text in ggplot2},
  author = {Allan Cameron and Teun {van den Brand}},
  year = {2022},
  note = {R package version 0.1.1},
  url = {https://allancameron.github.io/geomtextpath/},
}

@Manual{R-ggborderline,
  title = {ggborderline: Line Plots that Pop},
  author = {Jacob Scott},
  year = {2022},
  note = {R package version 0.2.0, 
https://wurli.github.io/ggborderline/},
  url = {https://github.com/wurli/ggborderline},
}

@Manual{R-ggdist,
  title = {ggdist: Visualizations of Distributions and Uncertainty},
  author = {Matthew Kay},
  year = {2023},
  note = {R package version 3.3.0, 
https://github.com/mjskay/ggdist/},
  url = {https://mjskay.github.io/ggdist/},
}

@Manual{R-ggimage,
  title = {ggimage: Use Image in ggplot2},
  author = {Guangchuang Yu},
  year = {2023},
  note = {R package version 0.3.3},
  url = {https://github.com/GuangchuangYu/ggimage},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
  year = {2023},
  note = {R package version 3.4.4, 
https://github.com/tidyverse/ggplot2},
  url = {https://ggplot2.tidyverse.org},
}

@Manual{R-ggrepel,
  title = {ggrepel: Automatically Position Non-Overlapping Text Labels with
ggplot2},
  author = {Kamil Slowikowski},
  year = {2023},
  note = {R package version 0.9.4},
  url = {https://github.com/slowkow/ggrepel},
}

@Manual{R-glmnet,
  title = {glmnet: Lasso and Elastic-Net Regularized Generalized Linear Models},
  author = {Jerome Friedman and Trevor Hastie and Rob Tibshirani and Balasubramanian Narasimhan and Kenneth Tay and Noah Simon and James Yang},
  year = {2023},
  note = {R package version 4.1-8},
  url = {https://glmnet.stanford.edu},
}

@Manual{R-glue,
  title = {glue: Interpreted String Literals},
  author = {Jim Hester and Jennifer Bryan},
  year = {2022},
  note = {R package version 1.6.2},
  url = {https://github.com/tidyverse/glue},
}

@Manual{R-gt,
  title = {gt: Easily Create Presentation-Ready Display Tables},
  author = {Richard Iannone and Joe Cheng and Barret Schloerke and Ellis Hughes and Alexandra Lauer and JooYoung Seo},
  year = {2023},
  note = {R package version 0.10.0},
  url = {https://gt.rstudio.com},
}

@Manual{R-gtExtras,
  title = {gtExtras: Extending gt for Beautiful HTML Tables},
  author = {Thomas Mock},
  year = {2023},
  note = {R package version 0.5.0, 
https://jthomasmock.github.io/gtExtras/},
  url = {https://github.com/jthomasmock/gtExtras},
}

@Manual{R-gtsummary,
  title = {gtsummary: Presentation-Ready Data Summary and Analytic Result Tables},
  author = {Daniel D. Sjoberg and Joseph Larmarange and Michael Curry and Jessica Lavery and Karissa Whiting and Emily C. Zabor},
  year = {2023},
  note = {R package version 1.7.2, 
https://www.danieldsjoberg.com/gtsummary/},
  url = {https://github.com/ddsjoberg/gtsummary},
}

@Manual{R-lightgbm,
  title = {lightgbm: Light Gradient Boosting Machine},
  author = {Yu Shi and Guolin Ke and Damien Soukhavong and James Lamb and Qi Meng and Thomas Finley and Taifeng Wang and Wei Chen and Weidong Ma and Qiwei Ye and Tie-Yan Liu and Nikita Titov},
  year = {2023},
  note = {R package version 3.3.5},
  url = {https://github.com/Microsoft/LightGBM},
}

@Manual{R-lubridate,
  title = {lubridate: Make Dealing with Dates a Little Easier},
  author = {Vitalie Spinu and Garrett Grolemund and Hadley Wickham},
  year = {2023},
  note = {R package version 1.9.3, 
https://github.com/tidyverse/lubridate},
  url = {https://lubridate.tidyverse.org},
}


@Manual{R-mlr3,
  title = {mlr3: Machine Learning in R - Next Generation},
  author = {Michel Lang and Bernd Bischl and Jakob Richter and Patrick Schratz and Martin Binder and Florian Pfisterer and Raphael Sonabend and Marc Becker},
  year = {2023},
  note = {R package version 0.17.0},
  url = {https://mlr3.mlr-org.com},
}

@Manual{R-patchwork,
  title = {patchwork: The Composer of Plots},
  author = {Thomas Lin Pedersen},
  year = {2023},
  note = {R package version 1.1.3, 
https://github.com/thomasp85/patchwork},
  url = {https://patchwork.data-imaginist.com},
}

@Manual{R-purrr,
  title = {purrr: Functional Programming Tools},
  author = {Hadley Wickham and Lionel Henry},
  year = {2023},
  note = {R package version 1.0.2},
  url = {https://purrr.tidyverse.org/},
}

@Manual{R-readr,
  title = {readr: Read Rectangular Text Data},
  author = {Hadley Wickham and Jim Hester and Jennifer Bryan},
  year = {2023},
  note = {R package version 2.1.4},
  url = {https://readr.tidyverse.org},
}

@Manual{R-scales,
  title = {scales: Scale Functions for Visualization},
  author = {Hadley Wickham and Dana Seidel},
  year = {2022},
  note = {R package version 1.2.1},
  url = {https://scales.r-lib.org},
}

@Manual{R-stringr,
  title = {stringr: Simple, Consistent Wrappers for Common String Operations},
  author = {Hadley Wickham},
  year = {2023},
  note = {R package version 1.5.1, 
https://github.com/tidyverse/stringr},
  url = {https://stringr.tidyverse.org},
}

@Manual{R-tibble,
  title = {tibble: Simple Data Frames},
  author = {Kirill Müller and Hadley Wickham},
  year = {2023},
  note = {R package version 3.2.1},
  url = {https://tibble.tidyverse.org/},
}

@Manual{R-tidyr,
  title = {tidyr: Tidy Messy Data},
  author = {Hadley Wickham and Davis Vaughan and Maximilian Girlich},
  year = {2023},
  note = {R package version 1.3.0},
  url = {https://tidyr.tidyverse.org},
}

@Manual{R-tidyverse,
  title = {tidyverse: Easily Install and Load the Tidyverse},
  author = {Hadley Wickham},
  year = {2023},
  note = {R package version 2.0.0, 
https://github.com/tidyverse/tidyverse},
  url = {https://tidyverse.tidyverse.org},
}

@Manual{R-xgboost,
  title = {xgboost: Extreme Gradient Boosting},
  author = {Tianqi Chen and Tong He and Michael Benesty and Vadim Khotilovich and Yuan Tang and Hyunsu Cho and Kailong Chen and Rory Mitchell and Ignacio Cano and Tianyi Zhou and Mu Li and Junyuan Xie and Min Lin and Yifeng Geng and Yutian Li and Jiaming Yuan},
  year = {2023},
  note = {R package version 1.7.5.1},
  url = {https://github.com/dmlc/xgboost},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Article{glmnet2010,
  title = {Regularization Paths for Generalized Linear Models via Coordinate Descent},
  author = {Jerome Friedman and Robert Tibshirani and Trevor Hastie},
  journal = {Journal of Statistical Software},
  year = {2010},
  volume = {33},
  number = {1},
  pages = {1--22},
  doi = {10.18637/jss.v033.i01},
}

@Article{glmnet2011,
  title = {Regularization Paths for Cox's Proportional Hazards Model via Coordinate Descent},
  author = {Noah Simon and Jerome Friedman and Robert Tibshirani and Trevor Hastie},
  journal = {Journal of Statistical Software},
  year = {2011},
  volume = {39},
  number = {5},
  pages = {1--13},
  doi = {10.18637/jss.v039.i05},
}

@Article{glmnet2023,
  title = {Elastic Net Regularization Paths for All Generalized Linear Models},
  author = {J. Kenneth Tay and Balasubramanian Narasimhan and Trevor Hastie},
  journal = {Journal of Statistical Software},
  year = {2023},
  volume = {106},
  number = {1},
  pages = {1--31},
  doi = {10.18637/jss.v106.i01},
}

@Article{gtsummary,
  author = {Daniel D. Sjoberg and Karissa Whiting and Michael Curry and Jessica A. Lavery and Joseph Larmarange},
  title = {Reproducible Summary Tables with the gtsummary Package},
  journal = {{The R Journal}},
  year = {2021},
  url = {https://doi.org/10.32614/RJ-2021-053},
  doi = {10.32614/RJ-2021-053},
  volume = {13},
  issue = {1},
  pages = {570-580},
}

@Article{lubridate2011,
  title = {Dates and Times Made Easy with {lubridate}},
  author = {Garrett Grolemund and Hadley Wickham},
  journal = {Journal of Statistical Software},
  year = {2011},
  volume = {40},
  number = {3},
  pages = {1--25},
  url = {https://www.jstatsoft.org/v40/i03/},
}

@Article{mgcv2011,
  title = {Fast stable restricted maximum likelihood and marginal 
likelihood estimation of semiparametric generalized linear models},
  journal = {Journal of the Royal Statistical Society (B)},
  volume = {73},
  number = {1},
  pages = {3-36},
  year = {2011},
  author = {S. N. Wood},
}

@Article{mgcv2016,
  title = {Smoothing parameter and model selection for general smooth models (with discussion)},
  author = {S.N. Wood and {N.} and {Pya} and B. S{"a}fken},
  journal = {Journal of the American Statistical Association},
  year = {2016},
  pages = {1548-1575},
  volume = {111},
}

@Article{mgcv2004,
  title = {Stable and efficient multiple smoothing parameter estimation for 
         generalized additive models},
  journal = {Journal of the American Statistical Association},
  volume = {99},
  number = {467},
  pages = {673-686},
  year = {2004},
  author = {S. N. Wood},
}

@Book{mgcv2017,
  title = {Generalized Additive Models: An Introduction with R},
  year = {2017},
  author = {S.N Wood},
  edition = {2},
  publisher = {Chapman and Hall/CRC},
}

@Article{mgcv2003,
  title = {Thin-plate regression splines},
  journal = {Journal of the Royal Statistical Society (B)},
  volume = {65},
  number = {1},
  pages = {95-114},
  year = {2003},
  author = {S. N. Wood},
}

@Article{mlr3,
  title = {{mlr3}: A modern object-oriented machine learning framework in {R}},
  author = {Michel Lang and Martin Binder and Jakob Richter and Patrick Schratz and Florian Pfisterer and Stefan Coors and Quay Au and Giuseppe Casalicchio and Lars Kotthoff and Bernd Bischl},
  journal = {Journal of Open Source Software},
  year = {2019},
  month = {dec},
  doi = {10.21105/joss.01903},
  url = {https://joss.theoj.org/papers/10.21105/joss.01903},
}

@Article{tidyverse2019,
  title = {Welcome to the {tidyverse}},
  author = {Hadley Wickham and Mara Averick and Jennifer Bryan and Winston Chang and Lucy D'Agostino McGowan and Romain François and Garrett Grolemund and Alex Hayes and Lionel Henry and Jim Hester and Max Kuhn and Thomas Lin Pedersen and Evan Miller and Stephan Milton Bache and Kirill Müller and Jeroen Ooms and David Robinson and Dana Paige Seidel and Vitalie Spinu and Kohske Takahashi and Davis Vaughan and Claus Wilke and Kara Woo and Hiroaki Yutani},
  year = {2019},
  journal = {Journal of Open Source Software},
  volume = {4},
  number = {43},
  pages = {1686},
  doi = {10.21105/joss.01686},
}