make(instructions)pdflatex(instructions)
Call make to compile the document. In order to correctly compile new references, call make references.
Ensure that the TARGET_FILE_NAME variable inside the Makefile has the name of the main latex file that is to be compiled. By default, the main latex file is called main_layout.tex.
When renaming the main latex file, remember to update TARGET_FILE_NAME with the new name.
The entire preamble is found in the preamble.tex file. You may find all the packages there.