From a16d07bb62dc44be93ee28b152e66b388b16a994 Mon Sep 17 00:00:00 2001 From: Lorenzo Rovigatti Date: Fri, 20 Jan 2023 23:51:39 +0100 Subject: [PATCH] Add a changelog for the new JOSS release --- CHANGELOG | 25 +++++++++++++++++++++++-- 1 file changed, 23 insertions(+), 2 deletions(-) diff --git a/CHANGELOG b/CHANGELOG index ebd001184..33c0fe2a2 100644 --- a/CHANGELOG +++ b/CHANGELOG @@ -1,4 +1,25 @@ -v. 3.4.2 +v. 3.5.1 + - Strip down the exprtk library to speed up compilation + - Fix a bug whereby setting lastconf_file to /dev/null would segfault + - Make the code compilable on older gcc versions (>= 5.4) + - Update some examples (fix the oxDNA path and remove references to the old UTILS folder) + - Remove some outdated examples + - Update the documentation + oxpy: + - Remove a redundant library from oxpy's linking stage + - Clean up include paths for pybind11, python_defs + oat: + - Functionalized db_to_force and forces2pairs + - Cleanup typing in forces2pairs + - Fixed bug where oxpy calls always said t=0 + - Fixed oxDNA1 incompatibility in output_bonds + - Added trajectory visualization and generally cleaned up bond_analysis + - Added desired bond output for the summary in bond_analysis + - RyeReader now handles confs with velocities removed + - Updated oxDNA_PDB to use RyeReader + - Removed deprecated readers.py + +v. 3.4.2 [6794178] - Change libcommon.so to liboxdna_common.so, allowing the file to be reasonably placed in a system-wide / non-specific library directory - Add methods to sync data from and to CUDA interactions (see 7e437f63a8c551333b677d56edc20121551741da) - Fix a bug whereby confs without momenta would be printed with trailing spaces @@ -10,7 +31,7 @@ v. 3.4.2 oat: - Fix external_force_utils import in exclude_force.py -v. 3.4.1 +v. 3.4.1 [238196f] - Fix a compilation bug of a contrib observable v. 3.4 [1c89963]