diff --git a/kubernetes/loculus/silo_import_job.sh b/kubernetes/loculus/silo_import_job.sh index e760e7628..9140a943e 100755 --- a/kubernetes/loculus/silo_import_job.sh +++ b/kubernetes/loculus/silo_import_job.sh @@ -150,6 +150,8 @@ download_data() { echo } +# Generate the preprocessing config file with the lineage file for the current pipeline version. +# the lineage definition file needs to be downloaded first. prepare_preprocessing_config() { rm $lineage_definition_file $preprocessing_config_file