From b421a966707d3a7718c4ec896dc4e0709f79b68d Mon Sep 17 00:00:00 2001 From: Theo Sanderson Date: Sat, 14 Dec 2024 01:05:53 +0000 Subject: [PATCH] up --- kubernetes/loculus/values.yaml | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/kubernetes/loculus/values.yaml b/kubernetes/loculus/values.yaml index 9ea1c055c..851f7df9b 100644 --- a/kubernetes/loculus/values.yaml +++ b/kubernetes/loculus/values.yaml @@ -42,8 +42,11 @@ defaultOrganismConfig: &defaultOrganismConfig url: "https://clades.nextstrain.org/?input-fasta={{https://metadata-sequence-combiner.vercel.app/api/combine?sequencesUrl={{[unalignedNucleotideSequences|json]}}&metadataUrl={{[metadata|json]}}&fields=displayName}}&dataset-name=nextstrain/ebola/sudan&dataset-server={{https://raw.githubusercontent.com/nextstrain/nextclade_data/ebola/data_output}}" - name: "Make a renamed fasta with dates" url: "https://metadata-sequence-combiner.vercel.app/api/combine?sequencesUrl={{[alignedNucleotideSequences|json]}}&metadataUrl={{[metadata|json]}}&fields=displayName,sampleCollectionDate" - - name: "Analyse with Delphy" + - name: "Analyse with Delphy (not working for some reason)" url: "https://delphy.fathom.info/?https://metadata-sequence-combiner.vercel.app/api/combine?sequencesUrl={{[alignedNucleotideSequences|json]}}&metadataUrl={{[metadata|json]}}&fields=displayName,sampleCollectionDate&filterForValidDateString=sampleCollectionDate" + - name: "Analyse with Delphy (use proxy, works)" + url: "https://delphy.fathom.info/?https://delphy.fathom.info/proxy/metadata-sequence-combiner.vercel.app/api/combine?sequencesUrl={{[alignedNucleotideSequences|json]}}&metadataUrl={{[metadata|json]}}&fields=displayName,sampleCollectionDate&filterForValidDateString=sampleCollectionDate" + earliestReleaseDate: enabled: true