diff --git a/README.md b/README.md index 18cda25..ed40cc1 100644 --- a/README.md +++ b/README.md @@ -8,7 +8,7 @@ ln -s selfSampleData/pacbio_filtered.fastq reads.fq git clone https://github.com/lh3/minimap2 && (cd minimap2 && make) git clone https://github.com/lh3/miniasm && (cd miniasm && make) # Overlap for PacBio reads (or use "-x ava-ont" for nanopore read overlapping) -minimap2/minimap2 -x ava-pb -t8 pb-reads.fq pb-reads.fq | gzip -1 > reads.paf.gz +minimap2/minimap2 -x ava-pb -t8 reads.fq reads.fq | gzip -1 > reads.paf.gz # Layout miniasm/miniasm -f reads.fq reads.paf.gz > reads.gfa ```