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Add genome and annotations for Glycine max HJ117 #199

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14 tasks
jd-campbell opened this issue Mar 11, 2024 · 0 comments
Open
14 tasks

Add genome and annotations for Glycine max HJ117 #199

jd-campbell opened this issue Mar 11, 2024 · 0 comments
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@jd-campbell
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Main steps for adding new genome and annotation collections

Genus/species/collection names:

  • Glycine/max/genomes/HJ117.gnm1.0ZV7

  • Glycine/max/annotations/HJ117.gnm1.ann1.L3ZL

  • Add collection(s) to the Data Store, including commits to datastore-metadata

  • Validate the README(s)

  • Update about_this_collection.yml

  • Calculate AHRD functional annotations

  • Calculate gene family assignments (.gfa)

  • Add to pan-gene set

  • Load relevant mine

  • Add BLAST targets

  • Incorporate into GCV

  • Update the jekyll collections listing

  • Update browser configs

  • run BUSCO

  • Update DSCensor

  • Add LINKOUTS to datastore, refresh linkout service

@jd-campbell jd-campbell self-assigned this Mar 11, 2024
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