From 071bb76434377ecbeaa7874cc145b5955260d032 Mon Sep 17 00:00:00 2001 From: julienleroux5 Date: Mon, 23 Sep 2024 22:56:00 +0200 Subject: [PATCH] vignettes links fixed --- README.Rmd | 2 +- README.md | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/README.Rmd b/README.Rmd index 790db81..2dbab3d 100644 --- a/README.Rmd +++ b/README.Rmd @@ -138,7 +138,7 @@ convert_all_samples_data(analysis_id = "e236bf99-31cd-44ae-a4e7-74915697df65", f This will save the samples data and metadata in the same `file.h5` file. -Other functions are available to only collect the data from the API to an R object, and then to save this R object to a Parquet file (see `vignette("collect-save-functions"))`. CCS values can also be retrieved in addition to bin index and drift time values, see `vignette("get-ccs-values").` +Other functions are available to only collect the data from the API to an R object, and then to save this R object to a Parquet file (see `vignette("collect-save-functions")`). CCS values can also be retrieved in addition to bin index and drift time values, see `vignette("get-ccs-values")`. Parquet or HDF5 files can be opened easily in `R` with the `arrow` or `rhdf5` packages. Parquet files contain both low and high energy spectra (HDMSe), and HDF5 files contain low energy in the "ms1" dataset, high energy in the "ms2" dataset, and metadata in the "metadata" dataset. The `fromJSON` function from `jsonlite` package will import the metadata json file (associated with the Parquet file) as a list of dataframes. diff --git a/README.md b/README.md index 4c235d8..3bbd531 100644 --- a/README.md +++ b/README.md @@ -139,9 +139,9 @@ This will save the samples data and metadata in the same `file.h5` file. Other functions are available to only collect the data from the API to an R object, and then to save this R object to a Parquet file (see -`vignette("collect-save-functions"))`. CCS values can also be retrieved +`vignette("collect-save-functions")`). CCS values can also be retrieved in addition to bin index and drift time values, see -`vignette("get-ccs-values").` +`vignette("get-ccs-values")`. Parquet or HDF5 files can be opened easily in `R` with the `arrow` or `rhdf5` packages. Parquet files contain both low and high energy spectra