From e0d17d3a053ee465f0009e374aeb9fe7b9bdff5a Mon Sep 17 00:00:00 2001 From: DominiqueMakowski Date: Fri, 17 Apr 2020 09:39:34 +0800 Subject: [PATCH 1/7] Create analysis_software_physio.md --- docs/analysis_software_physio.md | 16 ++++++++++++++++ 1 file changed, 16 insertions(+) create mode 100644 docs/analysis_software_physio.md diff --git a/docs/analysis_software_physio.md b/docs/analysis_software_physio.md new file mode 100644 index 0000000..4d53861 --- /dev/null +++ b/docs/analysis_software_physio.md @@ -0,0 +1,16 @@ +# Neuroimaging analysis software for physiological signals (ECG, EDA, EMG...) + + +## NeuroKit2 + +- [NeuroKit2](https://github.com/neuropsychology/NeuroKit): The Python Toolbox for Neurophysiological Signal Processing +- repository URL: +- website URL: [https://github.com/neuropsychology/NeuroKit](https://github.com/neuropsychology/NeuroKit) +- tutorial URL: [tutorials](https://github.com/neuropsychology/NeuroKit#documentation) +- documentation: [https://neurokit2.readthedocs.io/en/latest/](https://neurokit2.readthedocs.io/en/latest/) +- programming language: [python] +- paper DOI: +- RRID: +- contact: [issues](https://github.com/neuropsychology/NeuroKit/issues) + + From d4d969543eecfeb2d7ec65da5e1ee240d957f979 Mon Sep 17 00:00:00 2001 From: DominiqueMakowski Date: Fri, 17 Apr 2020 09:39:34 +0800 Subject: [PATCH 2/7] Create analysis_software_physio.md --- docs/analysis_software_physio.md | 16 ++++++++++++++++ 1 file changed, 16 insertions(+) create mode 100644 docs/analysis_software_physio.md diff --git a/docs/analysis_software_physio.md b/docs/analysis_software_physio.md new file mode 100644 index 0000000..4d53861 --- /dev/null +++ b/docs/analysis_software_physio.md @@ -0,0 +1,16 @@ +# Neuroimaging analysis software for physiological signals (ECG, EDA, EMG...) + + +## NeuroKit2 + +- [NeuroKit2](https://github.com/neuropsychology/NeuroKit): The Python Toolbox for Neurophysiological Signal Processing +- repository URL: +- website URL: [https://github.com/neuropsychology/NeuroKit](https://github.com/neuropsychology/NeuroKit) +- tutorial URL: [tutorials](https://github.com/neuropsychology/NeuroKit#documentation) +- documentation: [https://neurokit2.readthedocs.io/en/latest/](https://neurokit2.readthedocs.io/en/latest/) +- programming language: [python] +- paper DOI: +- RRID: +- contact: [issues](https://github.com/neuropsychology/NeuroKit/issues) + + From 409fc24c8764cdc5b09e260473681c8944411f4c Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Sun, 31 May 2020 15:19:44 +0200 Subject: [PATCH 3/7] add physio softwares to TOC --- docs/analysis_software_MEEG.md | 2 +- docs/analysis_software_MRI.md | 2 +- docs/analysis_software_physio.md | 5 +---- mkdocs.yml | 1 + 4 files changed, 4 insertions(+), 6 deletions(-) diff --git a/docs/analysis_software_MEEG.md b/docs/analysis_software_MEEG.md index 869d815..756c950 100644 --- a/docs/analysis_software_MEEG.md +++ b/docs/analysis_software_MEEG.md @@ -1,4 +1,4 @@ -# Neuroimaging analysis software for MEEG +# Analysis software for EEG and MEG The following list has been shamelessly taken from the excellent repo [Open Software for Human Electrophysiology](https://github.com/voytekresearch/OpenTools). Do check it out as it also includes plugins that are not listed here. diff --git a/docs/analysis_software_MRI.md b/docs/analysis_software_MRI.md index a0c52f2..1b482f9 100644 --- a/docs/analysis_software_MRI.md +++ b/docs/analysis_software_MRI.md @@ -1,4 +1,4 @@ -# Neuroimaging analysis software for MRI +# Analysis software for MRI ## AFNI diff --git a/docs/analysis_software_physio.md b/docs/analysis_software_physio.md index 4d53861..34cb740 100644 --- a/docs/analysis_software_physio.md +++ b/docs/analysis_software_physio.md @@ -1,5 +1,4 @@ -# Neuroimaging analysis software for physiological signals (ECG, EDA, EMG...) - +# Analysis software for physiological signals (ECG, EDA, EMG...) ## NeuroKit2 @@ -12,5 +11,3 @@ - paper DOI: - RRID: - contact: [issues](https://github.com/neuropsychology/NeuroKit/issues) - - diff --git a/mkdocs.yml b/mkdocs.yml index c798740..6173320 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -29,6 +29,7 @@ nav: - Computing: "computing.md" - MRI: "analysis_software_MRI.md" - MEEG: "analysis_software_MEEG.md" + - Other physiological signals: "analysis_software_physio.md" - Learning neuroimaging: "learning_neuroimaging.md" - Neuroimaging resources: "neuroimaging_resources.md" - Analysis: From e2d0c870a864cdfe3584f85b85efc1f15c76af13 Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Sun, 31 May 2020 15:26:40 +0200 Subject: [PATCH 4/7] use template for neurokit --- docs/analysis_software_physio.md | 28 +++++++++++++++++----------- 1 file changed, 17 insertions(+), 11 deletions(-) diff --git a/docs/analysis_software_physio.md b/docs/analysis_software_physio.md index 34cb740..889a902 100644 --- a/docs/analysis_software_physio.md +++ b/docs/analysis_software_physio.md @@ -1,13 +1,19 @@ # Analysis software for physiological signals (ECG, EDA, EMG...) -## NeuroKit2 - -- [NeuroKit2](https://github.com/neuropsychology/NeuroKit): The Python Toolbox for Neurophysiological Signal Processing -- repository URL: -- website URL: [https://github.com/neuropsychology/NeuroKit](https://github.com/neuropsychology/NeuroKit) -- tutorial URL: [tutorials](https://github.com/neuropsychology/NeuroKit#documentation) -- documentation: [https://neurokit2.readthedocs.io/en/latest/](https://neurokit2.readthedocs.io/en/latest/) -- programming language: [python] -- paper DOI: -- RRID: -- contact: [issues](https://github.com/neuropsychology/NeuroKit/issues) +??? example "NeuroKit - A python toolbox for statistics and neurophysiological signal processing" + - [code repository](https://github.com/neuropsychology/NeuroKit) + - [website](http://neurokit.readthedocs.io/en/latest/) + - [documentation](https://neurokit.readthedocs.io/en/latest/documentation.html) + - [contact](https://github.com/neuropsychology/NeuroKit/issues) + - programming language: {python} + - tags: {EDA} {EMG} {ECG} {MEG} {EEG} + - [paper] + - RRID: + - tutorial: + - [URL](https://neurokit.readthedocs.io/en/latest/tutorials/index.html) + - programming language: {python} + - level: + - tags: + - date: + - duration: + - by: From 81dbfa1de6c639fe2649d34a4c5aed81917d742f Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Sun, 31 May 2020 15:43:35 +0200 Subject: [PATCH 5/7] remove neurokit from MEEG page --- docs/analysis_software_MEEG.md | 12 ------------ 1 file changed, 12 deletions(-) diff --git a/docs/analysis_software_MEEG.md b/docs/analysis_software_MEEG.md index 756c950..c2417ec 100644 --- a/docs/analysis_software_MEEG.md +++ b/docs/analysis_software_MEEG.md @@ -30,18 +30,6 @@ The following are general purpose platforms, with functionality including: loadi - RRID: - contact: -### NeuroKit - -- [NeuroKit](http://neurokit.readthedocs.io/en/latest/) - A python toolbox for statistics and neurophysiological signal processing (EEG, EDA, ECG, EMG...). -- repository URL: [Github](https://github.com/neuropsychology/NeuroKit.py) -- website URL: [http://neurokit.readthedocs.io/en/latest/](http://neurokit.readthedocs.io/en/latest/) -- tutorial URL: [https://neurokit.readthedocs.io/en/latest/tutorials/index.html](https://neurokit.readthedocs.io/en/latest/tutorials/index.html) -- documentation: [https://neurokit.readthedocs.io/en/latest/documentation.html](https://neurokit.readthedocs.io/en/latest/documentation.html) -- programming language: {python} -- paper DOI: -- RRID: -- contact: - ### FieldTrip - [FieldTrip](http://www.fieldtriptoolbox.org) - A general purpose tool for processing, analyzing and visualizing toolbox for MEG, EEG, iEEG and NIRS data. From 957e62a6a4924494b58c4ac459f408d296afbe6e Mon Sep 17 00:00:00 2001 From: DominiqueMakowski Date: Sun, 31 May 2020 22:05:34 +0800 Subject: [PATCH 6/7] minor --- docs/analysis_software_physio.md | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/docs/analysis_software_physio.md b/docs/analysis_software_physio.md index 889a902..e773466 100644 --- a/docs/analysis_software_physio.md +++ b/docs/analysis_software_physio.md @@ -1,12 +1,12 @@ -# Analysis software for physiological signals (ECG, EDA, EMG...) +# Analysis software for physiological signals (ECG, PPG, EDA, EMG...) -??? example "NeuroKit - A python toolbox for statistics and neurophysiological signal processing" +??? example "NeuroKit2 - A python toolbox for statistics and neurophysiological signal processing" - [code repository](https://github.com/neuropsychology/NeuroKit) - - [website](http://neurokit.readthedocs.io/en/latest/) - - [documentation](https://neurokit.readthedocs.io/en/latest/documentation.html) + - [website](https://neurokit2.readthedocs.io/en/latest/introduction.html) + - [documentation](https://neurokit2.readthedocs.io/en/latest/introduction.html) - [contact](https://github.com/neuropsychology/NeuroKit/issues) - programming language: {python} - - tags: {EDA} {EMG} {ECG} {MEG} {EEG} + - tags: {EDA} {EMG} {ECG} {PPG} {RSP} {EEG} - [paper] - RRID: - tutorial: From 4b9f9a3ce59ae662a3e50be4505b348fd8067b19 Mon Sep 17 00:00:00 2001 From: Remi Gau Date: Sun, 31 May 2020 20:34:40 +0200 Subject: [PATCH 7/7] cleaning empty fields in neurokit tuto --- docs/analysis_software_physio.md | 7 +------ 1 file changed, 1 insertion(+), 6 deletions(-) diff --git a/docs/analysis_software_physio.md b/docs/analysis_software_physio.md index e773466..1deff4e 100644 --- a/docs/analysis_software_physio.md +++ b/docs/analysis_software_physio.md @@ -6,14 +6,9 @@ - [documentation](https://neurokit2.readthedocs.io/en/latest/introduction.html) - [contact](https://github.com/neuropsychology/NeuroKit/issues) - programming language: {python} - - tags: {EDA} {EMG} {ECG} {PPG} {RSP} {EEG} + - tags: {EDA} {EMG} {ECG} {PPG} {RSP} {EEG} - [paper] - RRID: - tutorial: - [URL](https://neurokit.readthedocs.io/en/latest/tutorials/index.html) - programming language: {python} - - level: - - tags: - - date: - - duration: - - by: