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In the GFA produced by Raven there are only two informations for each contig: LN (length of the contig) and RC (read count). What then happens when loading the GFA in Bandage is that the "coverage depth" displayed is RC/LN, which is a meaningless, very small number (e.g. 60/18412 = 0.003 for a 18412 bp contig supported by 60 reads). Would it be possible to add a DP field (like what e.g. Flye, Unicycler et SPAdes do) with the coverage depth information?
The text was updated successfully, but these errors were encountered:
Thanks for your great tool!
In the GFA produced by Raven there are only two informations for each contig: LN (length of the contig) and RC (read count). What then happens when loading the GFA in Bandage is that the "coverage depth" displayed is RC/LN, which is a meaningless, very small number (e.g. 60/18412 = 0.003 for a 18412 bp contig supported by 60 reads). Would it be possible to add a DP field (like what e.g. Flye, Unicycler et SPAdes do) with the coverage depth information?
The text was updated successfully, but these errors were encountered: