Contig length cutoff can be modified?

[javieriserte]

Reading other issue, i learnt that Raven has minimum contig length of 10 kpb. Can this value be modified?

[gwl2]

This would be great indeed!

[rvaser]

Hello,
you can try and do it manually here https://github.com/lbcb-sci/raven/blob/master/RavenLib/src/graph.cc#L7 and recompile.

Best regards,
Robert

[lipi0056]

This was added as a command line option, so you can specify it with -u, or --min-unitig-size , default value is 9999

[gwl2]

Thanks! Is the version with the command line option already released, or do I have to recompile as suggested above?

[lipi0056]

You need to pull the latest master branch and rebuild