install_tools.py

import os
import subprocess

from config import get_config

def install():
    save_dir = get_config()['tool_dir']
    if not os.path.isdir(save_dir):
        os.mkdir(save_dir)

    hifiasm_dir_name = f'hifiasm-0.18.8'
    if os.path.isfile(os.path.join(save_dir, hifiasm_dir_name, 'hifiasm')):
        print(f'\nFound hifiasm! Skipping installation...\n')
    else:
        # Install hifiasm
        print(f'\nInstalling hifisam...')
        subprocess.run(f'git clone https://github.com/chhylp123/hifiasm.git --branch 0.18.8 --single-branch {hifiasm_dir_name}', shell=True, cwd=save_dir)
        hifiasm_dir = os.path.join(save_dir, hifiasm_dir_name)
        subprocess.run(f'make', shell=True, cwd=hifiasm_dir)
        # print(f'Install hifiasm version: ', end='')
        # subprocess.run(f'./hifiasm --version', shell=True, cwd=hifiasm_dir)
        # print()

    raven_dir_name = f'raven-1.8.1'
    if os.path.isfile(os.path.join(save_dir, raven_dir_name, 'build', 'bin', 'raven')):
        print(f'\nFound raven! Skipping installation...\n')
    else:
        # Install Raven
        print(f'\nInstalling Raven...')
        subprocess.run(f'git clone https://github.com/lbcb-sci/raven.git --branch print_graphs --single-branch {raven_dir_name}', shell=True, cwd=save_dir)
        raven_dir = os.path.join(save_dir, raven_dir_name)
        subprocess.run(f'cmake -S ./ -B./build -DRAVEN_BUILD_EXE=1 -DCMAKE_BUILD_TYPE=Release', shell=True, cwd=raven_dir)
        subprocess.run(f'cmake --build build', shell=True, cwd=raven_dir)
        # print(f'Install Raven version: ', end='')
        # subprocess.run(f'./build/bin/raven --version', shell=True, cwd=raven_dir)
        # print()

    pbsim_dir_name = f'pbsim3'
    if os.path.isfile(os.path.join(save_dir, pbsim_dir_name, 'src', 'pbsim')):
        print(f'\nFound pbsim! Skipping installation...\n')
    else:
        # Install PBSIM3
        print(f'\nInstalling PBSIM3...')
        subprocess.run(f'git clone https://github.com/yukiteruono/pbsim3.git {pbsim_dir_name}', shell=True, cwd=save_dir)
        pbsim_dir = os.path.join(save_dir, pbsim_dir_name)
        subprocess.run(f'./configure; make; make install', shell=True, cwd=pbsim_dir)
        # print(f'Install PBSIM version: ', end='')
        # subprocess.run(f'./src/pbsim --version', shell=True, cwd=pbsim_dir)
        # print()


if __name__ == '__main__':
    install()