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The R package structure is a lot more restricted than for Python and there is a particular format you have to use for function documentation. The current website uses {pkgdown} which takes that format and converts it to HTML.
I did find a package that converts to ReadTheDocs format instead but we would have to try it out to see if it works and makes cross-linking easier.
I guess you could make the vignettes as a separate sphinx site but then lose the function documentation and lot of automated checking.
Add relevant cross-links between README, vignettes, man pages etc. and the main Python Lamin documentation
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