DESCRIPTION

Package: MungeSumstatsModified
Type: Package
Title: Standardise summary statistics from GWAS
Version: 1.11.8
Authors@R:
    c(person(given = "Alan",
           family = "Murphy",
           role = c("aut","cre"),
           email = "alanmurph94@hotmail.com",
           comment = c(ORCID = "0000-0002-2487-8753")),
     person(given = "Brian",
           family = "Schilder",
           role = c("aut","ctb"),
           email = "brian_schilder@alumni.brown.edu",
           comment = c(ORCID = "0000-0001-5949-2191")),
    person(given = "Nathan",
           family = "Skene",
           role = c("aut"),
           email = "nathan.skene@gmail.com",
           comment = c(ORCID = "0000-0002-6807-3180"))) 
Description: 
  The * MungeSumstatsModified * package is a modified package for * MungeSumstatsModified *. This update introduces a local chain option to the 'leftover' function, eliminating the need to download the chain file repeatedly. No other modifications have been made.

URL: https://github.com/neurogenomics/MungeSumstats
BugReports: https://github.com/neurogenomics/MungeSumstats/issues
License: Artistic-2.0
Depends: R(>= 4.1)
Imports: 
    magrittr, 
    data.table,
    utils,
    R.utils,
    dplyr, 
    stats,
    GenomicRanges,
    IRanges,
    GenomeInfoDb,
    BSgenome,
    Biostrings,
    stringr,
    VariantAnnotation,
    googleAuthR,
    httr,
    jsonlite,
    methods,
    parallel,
    rtracklayer(>= 1.59.1),
    RCurl
biocViews: 
    SNP, WholeGenome, Genetics, ComparativeGenomics, 
    GenomeWideAssociation, GenomicVariation, Preprocessing 
RoxygenNote: 7.3.1
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Suggests: 
    SNPlocs.Hsapiens.dbSNP144.GRCh37,
    SNPlocs.Hsapiens.dbSNP144.GRCh38,
    SNPlocs.Hsapiens.dbSNP155.GRCh37,
    SNPlocs.Hsapiens.dbSNP155.GRCh38,
    BSgenome.Hsapiens.1000genomes.hs37d5,
    BSgenome.Hsapiens.NCBI.GRCh38, 
    BiocGenerics, 
    S4Vectors,
    rmarkdown,
    markdown,
    knitr,
    testthat (>= 3.0.0),
    UpSetR,
    BiocStyle,
    covr, 
    Rsamtools,
    MatrixGenerics,
    badger,
    BiocParallel,
    GenomicFiles
Config/testthat/edition: 3
VignetteBuilder: knitr