diff --git a/.github/workflows/check_recipes.yml b/.github/workflows/check_recipes.yml index 49f3fb89..53fdbf93 100644 --- a/.github/workflows/check_recipes.yml +++ b/.github/workflows/check_recipes.yml @@ -26,9 +26,8 @@ jobs: # Setting up miniconda - uses: conda-incubator/setup-miniconda@v2 with: - condarc-file: .condarc.yml - activate-environment: test python-version: ${{ matrix.python-version }} + channels: conda-forge,bioconda,defaults - name: Set up test environment shell: bash -l {0} run: | diff --git a/README.md b/README.md index 04ba2af5..958d2c28 100644 --- a/README.md +++ b/README.md @@ -43,7 +43,7 @@ To ensure a smoother installation and avoid conflicting dependencies, it's highl ```bash # Install PPanGGOLiN into a new conda environment -conda create -n ppanggolin -c conda-forge -c bioconda ppanggolin +conda create -n ppanggolin -c defaults -c conda-forge -c bioconda ppanggolin # Check PPanGGOLiN install conda activate ppanggolin diff --git a/docs/user/install.md b/docs/user/install.md index 260b496d..40172657 100644 --- a/docs/user/install.md +++ b/docs/user/install.md @@ -11,7 +11,7 @@ To ensure a smoother installation and avoid conflicting dependencies, it's highl ```bash # Install into a new conda environment -conda create -n ppanggo -c conda-forge -c bioconda ppanggolin +conda create -n ppanggo -c defaults -c conda-forge -c bioconda ppanggolin # Check PPanGGOLiN install conda activate ppanggo