From b878a4c649ca45657ae90ce53c29dfd19f5dd43f Mon Sep 17 00:00:00 2001
From: JeanMainguy <jean.mainguy@outlook.fr>
Date: Fri, 13 Oct 2023 18:30:07 +0200
Subject: [PATCH] fix famseq wrong None type

---
 ppanggolin/context/searchGeneContext.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/ppanggolin/context/searchGeneContext.py b/ppanggolin/context/searchGeneContext.py
index 18fe83ce..fc3ded05 100644
--- a/ppanggolin/context/searchGeneContext.py
+++ b/ppanggolin/context/searchGeneContext.py
@@ -66,7 +66,7 @@ def search_gene_context_in_pangenome(pangenome: Pangenome, output: Path, tmpdir:
     check_pangenome_info(pangenome, need_annotations=True, need_families=True, disable_bar=disable_bar)
 
     families_of_interest = set()
-    family_2_input_seqid = None
+    family_2_input_seqid = {}
     if sequence_file is not None:
         # Alignment of sequences on pangenome families
         with read_compressed_or_not(sequence_file) as seqFileObj: