From 1191ffd285fee91763015d3b3fdd1361be990a4d Mon Sep 17 00:00:00 2001 From: thomas-bailly Date: Thu, 19 Sep 2024 16:18:13 +0200 Subject: [PATCH] fix: unmasks the --mem option The --mem option was hidden for all sub-commands except blastp --- set_caesar.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/set_caesar.py b/set_caesar.py index 7a890e5..e852cc1 100644 --- a/set_caesar.py +++ b/set_caesar.py @@ -966,7 +966,7 @@ def hmmsearch_cmd(subcommand: argparse._SubParsersAction): hmmsearch.add_argument("-t", "--threads", type=int, metavar="", default=6, help="number of cpu threads [default: 6]") hmmsearch.add_argument("-m", "--mem", type=str, metavar="", default="4G", - help=argparse.SUPPRESS) + help="memory limit for the clustering step [default: 4G]") required_opt = hmmsearch.add_argument_group("Mandatory inputs") required_opt.add_argument("-c", "--config", type=str, metavar="", @@ -1039,7 +1039,7 @@ def filter_cmd(subcommand: argparse._SubParsersAction): filter_sub.add_argument("-t", "--threads", type=int, metavar="", default=6, help="number of cpu threads [default: 6]") filter_sub.add_argument("-m", "--mem", type=str, metavar="", default="4G", - help=argparse.SUPPRESS) + help="memory limit for the clustering step [default: 4G]") required_opt = filter_sub.add_argument_group("Mandatory inputs") required_opt.add_argument("-c", "--config", type=str, metavar="", @@ -1118,7 +1118,7 @@ def clustering_cmd(subcommand: argparse._SubParsersAction): clustering.add_argument("-t", "--threads", type=int, metavar="", default=6, help="number of cpu threads [default: 6]") clustering.add_argument("-m", "--mem", type=str, metavar="", default="4G", - help=argparse.SUPPRESS) + help="memory limit for the clustering step [default: 4G]") required_opt = clustering.add_argument_group("Mandatory inputs") required_opt.add_argument("-c", "--config", type=str, metavar="",