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prospectr

version 0.2.7 - cakes

submission message:

Dear CRAN maintainers, I am submitting my package "prospectr" to CRAN. This version fixes problems with the documentation which were reported in the CRAN checks. Prior to this submission, this tarball has been checked with in the winbuilder service. Apart from that it has been also submitted to extensive tests in rhub. For this second submission the package passed all the tests in the above platforms. Reverse dependencies have also been checked. Best regards, Leonardo

Package was built using:

devtools::build(
  pkg = ".",
  path = NULL,
  binary = FALSE,
  vignettes = TRUE,
  manual = TRUE,
  args = NULL,
  quiet = FALSE
)

R win builder checks for release of prospectr 0.2.7 (ccakes) 15.02.2024

passed all the checks without notes.

Rhub checks for release of prospectr 0.2.7 (ccakes) 15.02.2024

The checks were conducted in the following platforms through rhub:

rhub::check(paste0(gsub("/prospectr$", "/", getwd()), "prospectr_0.2.7.tar.gz"), 
            platform = c("fedora-gcc-devel"), 
            email = "[email protected]")
  • "fedora-gcc-devel" NOTE
  • checking installed package size ... NOTE installed size is 6.5Mb sub-directories of 1Mb or more: data 1.9Mb libs 3.1Mb

  • "windows-x86_64-devel" OK

  • "macos-highsierra-release-cran" (not tested)

  • "windows-x86_64-release" OK

  • "ubuntu-gcc-release" OK

  • "solaris-x86-patched-ods" (not tested)

version 0.2.6 - chicago

submission message:

Dear CRAN maintainers, I am submitting my package "prospectr" to CRAN. This version accounts for problems found in Rd files auto-generated with roxygen2 7.1.2 (not compatible with HTML5). The new Rd files are now compatible with HTML5 (as Rd files are generated with roxygen2_7.2.0 ). Prior to this submission, this tarball has been checked with in the winbuilder service. Apart from that it has been also submitted to extensive tests in rhub. A first submission of this version failed (for "r-devel-linux-x86_64-debian-gcc"), therefore following platforms were tested for a second submission using Rhub:

  • Debian Linux, R-devel, GCC ASAN/UBSAN
  • Debian Linux, R-devel, GCC, no long double
  • Debian Linux, R-devel, clang, ISO-8859-15 locale
  • Debian Linux, R-devel, GCC For this second submission the package passed all the tests in the above platforms. Reverse dependencies have also been checked. Best regards, Leonardo

Package was built using:

devtools::build(
  pkg = ".",
  path = NULL,
  binary = FALSE,
  vignettes = TRUE,
  manual = TRUE,
  args = NULL,
  quiet = FALSE
)

R win builder checks for release of prospectr 0.2.6 (chicago) 30.08.2022

passed all the checks without notes.

Rhub checks for release of prospectr 0.2.6 (chicago) 30.08.2022

The checks were conducted in the following platforms through rhub:

rhub::check(paste0(gsub("/prospectr$", "/", getwd()), "prospectr_0.2.6.tar.gz"), 
            platform = c("fedora-gcc-devel"), 
            email = "[email protected]")

  • "linux-x86_64-rocker-gcc-san"

  • "fedora-gcc-devel" NOTE installed size is 6.6Mb sub-directories of 1Mb or more: data 1.9Mb libs 3.9Mb

  • "windows-x86_64-devel" OK

  • "macos-highsierra-release-cran" OK

  • "windows-x86_64-release" OK

  • "ubuntu-gcc-release" NOTE installed size is 6.8Mb sub-directories of 1Mb or more: data 1.9Mb libs 4.0Mb

  • "solaris-x86-patched-ods" checking package dependencies (2.7s) Package suggested but not available: ‘testthat’

    The suggested packages are required for a complete check. Checking can be attempted without them by setting the environment variable R_CHECK_FORCE_SUGGESTS to a false value.

    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.

version 0.2.5 - antilla

submission message:

Dear CRAN maintainers, I am submitting my package "prospectr" to CRAN. This version accounts for some bugs. Prior to this submission, this tarball has been checked with in the winbuilder service. Apart from that it has been also submitted to extensive tests in rhub. A first submission of this version failed (for "r-devel-linux-x86_64-debian-gcc"), therefore following platforms were tested for a second submission using Rhub:

  • Debian Linux, R-devel, GCC ASAN/UBSAN
  • Debian Linux, R-devel, GCC, no long double
  • Debian Linux, R-devel, clang, ISO-8859-15 locale
  • Debian Linux, R-devel, GCC For this second submission the package passed all the tests in the above platforms. Reverse dependencies have also been checked. Best regards, Leonardo

Package was built using:

devtools::build(
  pkg = ".",
  path = NULL,
  binary = FALSE,
  vignettes = TRUE,
  manual = TRUE,
  args = NULL,
  quiet = FALSE
)

R win builder checks for release of prospectr 0.2.5 (antilla) 19.07.2022

passed all the checks without notes.

Rhub checks for release of prospectr 0.2.5 (antilla) 18.07.2022

The checks were conducted in the following platforms through rhub:

rhub::check(paste0(gsub("/prospectr$", "/", getwd()), "prospectr_0.2.5.tar.gz"), 
            platform = c("fedora-gcc-devel"), 
            email = "[email protected]")

  • "linux-x86_64-rocker-gcc-san"

  • "fedora-gcc-devel" NOTE installed size is 6.6Mb sub-directories of 1Mb or more: data 1.9Mb libs 3.9Mb

  • "windows-x86_64-devel" OK

  • "macos-highsierra-release-cran" OK

  • "windows-x86_64-release" OK

  • "ubuntu-gcc-release" NOTE installed size is 6.8Mb sub-directories of 1Mb or more: data 1.9Mb libs 4.0Mb

  • "solaris-x86-patched-ods" checking package dependencies (2.7s) Package suggested but not available: ‘testthat’

    The suggested packages are required for a complete check. Checking can be attempted without them by setting the environment variable R_CHECK_FORCE_SUGGESTS to a false value.

    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.

version 0.2.4

submission message:

Dear CRAN maintainers, I am submitting my package "prospectr" to CRAN. This version accounts a bug in one function. Prior to this submission, this tarball has been checked with in the winbuilder service. Apart from that it has been also submitted to extensive tests in rhub. Reverse dependencies have also been checked. Best regards, Leonardo

Package was built using:

devtools::build(
  pkg = ".",
  path = NULL,
  binary = FALSE,
  vignettes = TRUE,
  manual = TRUE,
  args = NULL,
  quiet = FALSE
)

R win builder checks for release of prospectr 0.2.4 (mandarina) 03.04.2022 passed all the checks without notes

Rhub checks for release of prospectr 0.2.4 (mandarina) 03.04.2022

The checks were conducted in the following platforms through rhub:

rhub::check(paste0(gsub("/prospectr$", "/", getwd()), "prospectr_0.2.4.tar.gz"), 
            platform = c("fedora-gcc-devel"), 
            email = "[email protected]")

Since there was an error with the first submission (with the flavor "r-devel-linux-x86_64-debian-gcc"), the following platforms were added: linux-x86_64-rocker-gcc-san; debian-gcc-devel-nold; debian-gcc-devel

  • linux-x86_64-rocker-gcc-san OK

  • debian-gcc-devel-nold OK

  • debian-gcc-devel OK

  • "fedora-gcc-devel"

  • checking installed package size ... NOTE installed size is 6.6Mb sub-directories of 1Mb or more: data 1.9Mb libs 3.9Mb

  • "windows-x86_64-devel" OK

  • "macos-highsierra-release-cran" OK

  • "windows-x86_64-release"

  • checking installed package size ... NOTE installed size is 5.2Mb sub-directories of 1Mb or more: data 1.9Mb libs 2.4Mb
  • "ubuntu-gcc-release"
  • checking installed package size ... NOTE installed size is 7.0Mb sub-directories of 1Mb or more: data 1.9Mb libs 4.2Mb
  • "solaris-x86-patched-ods" OK

A first submission to CRAN was rejected. The problem:

Flavor: r-devel-linux-x86_64-debian-gcc Check: package subdirectories, Result: NOTE Problems with news in 'NEWS': Cannot process chunk/lines: function to run when the number of groups to be selected was smaller than the Cannot process chunk/lines: total number of groups. This sanity check has been fixed. Thanks to Cannot process chunk/lines: on a matrix of one column. By default the funcion transforms the matrix onto Cannot process chunk/lines: the Mahalanobis space using either SVD or eigendecomposition. This makes sense Cannot process chunk/lines: for matrices with more than two columns. However for a matrix of one column, we Cannot process chunk/lines: now assume that such space is equivalent to the variable divided by the its Cannot process chunk/lines: standard deviation. Thanks to Sergio Roldán (https://github.com/sdroldan) for Cannot process chunk/lines: in the spectra was returning an error. This was a bug introduced in Cannot process chunk/lines: for reporting this. Cannot process chunk/lines: confounding maximum values of a peaks as part of the baseline. This has been Cannot process chunk/lines: addressed in this version by ensuring the envelope used in the computation of the Cannot process chunk/lines: convex hull (used to extract the baseline) is properly defined. At the edges, Cannot process chunk/lines: invalid. This preventing the function from reading any nir file. This has been Cannot process chunk/lines: fixed. Cannot process chunk/lines: calibration sample search with a user-defined subset of observations (which are Cannot process chunk/lines: to be included in the final calibration subset). Thanks to Thorsten Behrens and Cannot process chunk/lines: derivatives. In previous versions the function only allowed up to derivatives of 4th order, in this version the the function accepts as derivative order Cannot process chunk/lines: any integer larger than 1. ## Improvements and fixes * binning() a bug in the creation of the binning groups has been fixed. This bug Cannot process chunk/lines: is in fact inherited from a problem in the findInterval() function. The breaks (given in the vec arument) might get corrupted when they contain many decimal Cannot process chunk/lines: places. These breaks (in vec) are used to define the final bins. The problem in Cannot process chunk/lines: the binning function was that when a frequency Cannot process chunk/lines: variable (e.g. wavelength) was exactly on the left of the bin Cannot process chunk/lines: range the variable was assigned to the next bin. In some cases this lead to Cannot process chunk/lines: argument. Previously it only accepted a vector of length two. For example, now it Cannot process chunk/lines: corrrects for splice steps of spectra that originates from spectrometers Cannot process chunk/lines: with two detectors (i.e. it corrects for the potential abrupt transition Cannot process chunk/lines: function evaluaes whether it is indeed a file properly produced by the BUCHI Cannot process chunk/lines: derivative (gapDer) function. One of the factors in the filter had a wrong Cannot process chunk/lines: prevented the function from reading the Description field properly ## Changes * In the msc() function the argument reference_spc has been renamed to ref_spectrum to emphasize that its input must be is a vector and not a Cannot process chunk/lines: matrix of spectra. Cannot process chunk/lines: to reduce the installation size of the package. Now these lines have been

version 0.2.3

submission message:

Dear CRAN maintainers, I am submitting my package "prospectr" to CRAN. This version accounts for some bugs. Prior to this submission, this tarball has been checked with in the winbuilder service. Apart from that it has been also submitted to extensive tests in rhub. Reverse dependencies have also been checked. Best regards, Leonardo

Package was built using:

devtools::build(
  pkg = ".",
  path = NULL,
  binary = FALSE,
  vignettes = TRUE,
  manual = TRUE,
  args = NULL,
  quiet = FALSE
)

The aim of the release was to fix minor bugs

R win builder checks for release of prospectr 0.2.3 (positive) 18.02.2022 passed all the checks without notes

Rhub checks for release of prospectr 0.2.3 (positive) 18.02.2022

The checks were conducted in the following platforms through rhub:

rhub::check(paste0(gsub("/prospectr$", "/", getwd()), "prospectr_0.2.3.tar.gz"), 
            platform = c("fedora-gcc-devel"), 
            email = "[email protected]")
  • "fedora-gcc-devel" NOTE
  • checking installed package size ... NOTE installed size is 6.7Mb sub-directories of 1Mb or more: data 1.9Mb libs 4.0Mb

  • "windows-x86_64-devel" OK

  • "macos-highsierra-release-cran" OK

  • "windows-x86_64-release" OK

  • "linux-x86_64-rocker-gcc-san" ## Not checked Rhub returned a PREPERROR

  • "ubuntu-gcc-release" NOTE

  • checking installed package size ... NOTE installed size is 7.0Mb sub-directories of 1Mb or more: data 1.9Mb libs 4.2Mb
  • "solaris-x86-patched-ods"

version 0.2.2

Package was built using:

devtools::build(
  pkg = ".",
  path = NULL,
  binary = FALSE,
  vignettes = TRUE,
  manual = TRUE,
  args = NULL,
  quiet = FALSE
)

The package was stripping some symbols for Rcpp functions in Makevars in order to reduce the installation size of the package. Now these lines have been commented to comply with CRAN policies: #strippedLib: $(SHLIB)

if test -e "/usr/bin/strip" & test -e "/bin/uname" & [[ uname == "Linux" ]]; then /usr/bin/strip --strip-debug $(SHLIB); fi

#.phony: strippedLib

Rhub checks for release of prospectr 0.2.2 (flawil) 26.11.2021

The checks were conducted in the following platforms through rhub:

rhub::check("/home/rl_leonardo/github/prospectr_0.2.2.tar.gz", 
            platform = c("fedora-gcc-devel"), 
            email = "[email protected]")

  • "windows-x86_64-devel" OK

  • "macos-highsierra-release-cran" OK

  • "linux-x86_64-rocker-gcc-san" ## Not checked Rhub throwed a PREPERROR

  • "ubuntu-gcc-release"

  • checking installed package size ... NOTE installed size is 7.5Mb sub-directories of 1Mb or more: data 1.9Mb libs 4.2Mb "debian-clang-devel" OK

  • "fedora-gcc-devel" checking installed package size ... NOTE installed size is 7.3Mb sub-directories of 1Mb or more: data 1.9Mb libs 4.0Mb

  • "solaris-x86-patched-ods" OK

version 0.2.1

Rhub checks for release of prospectr 0.2.1 (seville)

24.10.2020

The checks were conducted in the following platforms through rhub:

  • "debian-clang-devel"

  • "debian-gcc-devel"

  • "fedora-gcc-devel"

  • "debian-gcc-devel-nold"

  • "debian-gcc-patched"

  • "debian-gcc-release"

  • "linux-x86_64-rocker-gcc-san"

  • "macos-highsierra-release-cran"

  • "solaris-x86-patched-ods"

  • "ubuntu-gcc-release"

  • "windows-x86_64-devel"

For example, for checks with "fedora-gcc-devel"", the following code was used::

rhub::check("C:/Users/raml/Documents/GitHub/prospectr_0.2.1.tar.gz", 
            platform = c("fedora-gcc-devel"), 
            email = "[email protected]")

Size of the package

To reduce the size of the package, Makevars was modified was added.

Vignette

The package uses html_vignette. For a pdf vignette, the checks for "fedora-gcc-devel"and "fedora-clang-devel" at rhub, were throwing an error indicating that the "framed.sty" package was not available?

NOTE for compiled code

An strange not was thrown when the check was done locally on windows with R 4.0.3 It is apparently a problem in R core and not related to the package nor Rcpp. The issue was reported here: https://stackoverflow.com/questions/64402688/information-on-o-files-for-x64-is-not-available-note-on-r-package-checks-using/64419033#64419033