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modules.json
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modules.json
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{
"name": "nf-core/viralrecon",
"homePage": "https://github.com/nf-core/viralrecon",
"repos": {
"nf-core/modules": {
"abacas": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"artic/guppyplex": {
"git_sha": "589f39c39e05fdd9493e765b1d2b4385d3b68fde"
},
"artic/minion": {
"git_sha": "589f39c39e05fdd9493e765b1d2b4385d3b68fde"
},
"bandage/image": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"bcftools/consensus": {
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},
"bcftools/filter": {
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},
"bcftools/mpileup": {
"git_sha": "682f789f93070bd047868300dd018faf3d434e7c"
},
"bcftools/norm": {
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},
"bcftools/query": {
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},
"bcftools/sort": {
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},
"bcftools/stats": {
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},
"bedtools/getfasta": {
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},
"bedtools/maskfasta": {
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},
"bedtools/merge": {
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},
"blast/blastn": {
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},
"blast/makeblastdb": {
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},
"bowtie2/align": {
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"bowtie2/build": {
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},
"cat/fastq": {
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},
"custom/dumpsoftwareversions": {
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},
"custom/getchromsizes": {
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},
"fastp": {
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},
"fastqc": {
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"gunzip": {
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},
"ivar/consensus": {
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"ivar/trim": {
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},
"ivar/variants": {
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"kraken2/kraken2": {
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"minia": {
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"mosdepth": {
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},
"nanoplot": {
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},
"nextclade/datasetget": {
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},
"nextclade/run": {
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},
"pangolin": {
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},
"picard/collectmultiplemetrics": {
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},
"picard/markduplicates": {
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"plasmidid": {
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"pycoqc": {
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"quast": {
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"samtools/flagstat": {
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"samtools/idxstats": {
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"samtools/index": {
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"samtools/sort": {
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"samtools/stats": {
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"samtools/view": {
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"spades": {
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"tabix/bgzip": {
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"tabix/tabix": {
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"unicycler": {
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"untar": {
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},
"vcflib/vcfuniq": {
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}
}
}
}