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effects of sequence coverage on the estimate #23

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jianshu93 opened this issue Aug 27, 2023 · 0 comments
Open

effects of sequence coverage on the estimate #23

jianshu93 opened this issue Aug 27, 2023 · 0 comments

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@jianshu93
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Hello mcorr team,

I am wondering for the metagenomic case, whether the coverage of the target genome affected the final c estimate. I can see that the simulation use 5X coverage for the genome. In many real world cases, coverage varies by quite a lot sample by sample. Is there a rule to say what coverage threshold is the best, e.g., >5X?

Thanks for the great tool.

Jianshu

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