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development.yaml
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name: Development
on:
push:
branches:
- "**" # every branch
- "!gh-pages" # exclude gh-pages branch
- "!stage*" # exclude branches beginning with stage
tags:
- '\d+\.\d+\.\d+' # only semver tags
pull_request:
branches:
- "**" # every branch
- "!gh-pages" # exclude gh-pages branch
- "!stage*" # exclude branches beginning with stage
jobs:
build:
runs-on: ubuntu-latest
strategy:
matrix:
include:
- py_ver: "3.9"
distro: debian
image: djbase
env:
PY_VER: ${{matrix.py_ver}}
DISTRO: ${{matrix.distro}}
IMAGE: ${{matrix.image}}
DOCKER_CLIENT_TIMEOUT: "120"
COMPOSE_HTTP_TIMEOUT: "120"
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: ${{matrix.py_ver}}
- name: Validate version and release notes
run: |
DJ_VERSION=$(grep -oP '\d+\.\d+\.\d+' datajoint/version.py)
RELEASE_BODY=$(python3 -c \
'print(open("./CHANGELOG.md").read().split("\n\n")[1].split("\n", 1)[1])' \
)
echo "DJ_VERSION=${DJ_VERSION}" >> $GITHUB_ENV
echo "RELEASE_BODY<<EOF" >> $GITHUB_ENV
echo "$RELEASE_BODY" >> $GITHUB_ENV
echo "EOF" >> $GITHUB_ENV
- name: Build pip artifacts
run: |
python3 -m pip install build
python3 -m build .
echo "DJ_VERSION=${DJ_VERSION}" >> $GITHUB_ENV
- if: matrix.py_ver == '3.9' && matrix.distro == 'debian'
name: Add pip artifacts
uses: actions/upload-artifact@v3
with:
name: pip-datajoint-${{env.DJ_VERSION}}
path: dist
retention-days: 1
test:
runs-on: ubuntu-latest
strategy:
matrix:
py_ver: ["3.9"]
mysql_ver: ["8.0", "5.7"]
include:
- py_ver: "3.13"
mysql_ver: "8.0"
- py_ver: "3.12"
mysql_ver: "8.0"
- py_ver: "3.11"
mysql_ver: "8.0"
- py_ver: "3.10"
mysql_ver: "8.0"
- py_ver: "3.8"
mysql_ver: "5.7"
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{matrix.py_ver}}
uses: actions/setup-python@v5
with:
python-version: ${{matrix.py_ver}}
- name: Run primary tests
env:
PY_VER: ${{matrix.py_ver}}
DJ_PASS: password
MYSQL_VER: ${{matrix.mysql_ver}}
DISTRO: alpine
MINIO_VER: RELEASE.2021-09-03T03-56-13Z
DOCKER_CLIENT_TIMEOUT: "120"
COMPOSE_HTTP_TIMEOUT: "120"
run: |
export HOST_UID=$(id -u)
docker compose --profile test up --quiet-pull --build --exit-code-from djtest djtest
lint:
runs-on: ubuntu-latest
strategy:
matrix:
py_ver: ["3.11"]
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{matrix.py_ver}}
uses: actions/setup-python@v5
with:
python-version: ${{matrix.py_ver}}
- name: Install dependencies
run: |
python3 -m pip install --upgrade pip
python3 -m pip install ".[test]"
- name: Run syntax tests
run: flake8 datajoint --count --select=E9,F63,F7,F82 --show-source --statistics
- name: Run style tests
run: |
flake8 --ignore=E203,E722,W503 datajoint \
--count --max-complexity=62 --max-line-length=127 --statistics \
--per-file-ignores='datajoint/diagram.py:C901'
black --required-version '24.2.0' --check -v datajoint tests
codespell:
name: Check for spelling errors
permissions:
contents: read
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Codespell
uses: codespell-project/actions-codespell@v2
publish-docs:
if: |
github.event_name == 'push' &&
startsWith(github.ref, 'refs/tags')
needs: test
runs-on: ubuntu-latest
env:
DOCKER_CLIENT_TIMEOUT: "120"
COMPOSE_HTTP_TIMEOUT: "120"
steps:
- uses: actions/checkout@v4
- name: Deploy docs
run: |
export MODE=BUILD
export PACKAGE=datajoint
export UPSTREAM_REPO=https://github.com/${GITHUB_REPOSITORY}.git
export HOST_UID=$(id -u)
docker compose -f docs/docker-compose.yaml up --quiet-pull --exit-code-from docs --build
git push origin gh-pages
publish-release:
if: |
github.event_name == 'push' &&
startsWith(github.ref, 'refs/tags')
needs: test
runs-on: ubuntu-latest
strategy:
matrix:
include:
- py_ver: "3.9"
distro: debian
image: djbase
env:
PY_VER: ${{matrix.py_ver}}
DISTRO: ${{matrix.distro}}
IMAGE: ${{matrix.image}}
TWINE_USERNAME: ${{secrets.twine_username}}
TWINE_PASSWORD: ${{secrets.twine_password}}
DOCKER_CLIENT_TIMEOUT: "120"
COMPOSE_HTTP_TIMEOUT: "120"
outputs:
release_upload_url: ${{steps.create_gh_release.outputs.upload_url}}
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{matrix.py_ver}}
uses: actions/setup-python@v5
with:
python-version: ${{matrix.py_ver}}
- name: Determine package version
run: |
DJ_VERSION=$(grep -oP '\d+\.\d+\.\d+' datajoint/version.py)
RELEASE_BODY=$(python -c \
'print(open("./CHANGELOG.md").read().split("\n\n")[1].split("\n", 1)[1])' \
)
echo "DJ_VERSION=${DJ_VERSION}" >> $GITHUB_ENV
echo "RELEASE_BODY<<EOF" >> $GITHUB_ENV
echo "$RELEASE_BODY" >> $GITHUB_ENV
echo "EOF" >> $GITHUB_ENV
- name: Create GH release
id: create_gh_release
uses: actions/create-release@v1
env:
GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}}
with:
tag_name: ${{env.DJ_VERSION}}
release_name: Release ${{env.DJ_VERSION}}
body: ${{env.RELEASE_BODY}}
prerelease: false
draft: false
- name: Fetch pip artifacts
uses: actions/download-artifact@v3
with:
name: pip-datajoint-${{env.DJ_VERSION}}
path: dist
- name: Determine pip artifact paths
run: |
echo "DJ_WHEEL_PATH=$(ls dist/datajoint-*.whl)" >> $GITHUB_ENV
echo "DJ_SDIST_PATH=$(ls dist/datajoint-*.tar.gz)" >> $GITHUB_ENV
- name: Upload pip wheel asset to release
uses: actions/upload-release-asset@v1
env:
GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}}
with:
upload_url: ${{steps.create_gh_release.outputs.upload_url}}
asset_path: ${{env.DJ_WHEEL_PATH}}
asset_name: pip-datajoint-${{env.DJ_VERSION}}.whl
asset_content_type: application/zip
- name: Upload pip sdist asset to release
uses: actions/upload-release-asset@v1
env:
GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}}
with:
upload_url: ${{steps.create_gh_release.outputs.upload_url}}
asset_path: ${{env.DJ_SDIST_PATH}}
asset_name: pip-datajoint-${{env.DJ_VERSION}}.tar.gz
asset_content_type: application/gzip
- name: Publish pip release
run: |
export HOST_UID=$(id -u)
docker compose run --build --quiet-pull \
-e TWINE_USERNAME=${TWINE_USERNAME} -e TWINE_PASSWORD=${TWINE_PASSWORD} app \
sh -c "pip install twine && python -m twine upload dist/*"
- name: Login to DockerHub
uses: docker/login-action@v3
with:
username: ${{secrets.docker_username}}
password: ${{secrets.docker_password}}
- name: Publish image
run: |
IMAGE=$(docker images --filter "reference=datajoint/datajoint*" --format "{{.Repository}}")
TAG=$(docker images --filter "reference=datajoint/datajoint*" --format "{{.Tag}}")
docker push "${IMAGE}:${TAG}"
docker tag "${IMAGE}:${TAG}" "${IMAGE}:${TAG}-${GITHUB_SHA:0:7}"
docker push "${IMAGE}:${TAG}-${GITHUB_SHA:0:7}"
[ "$PY_VER" == "3.9" ] && [ "$DISTRO" == "debian" ] \
&& docker tag "${IMAGE}:${TAG}" "${IMAGE}:latest" \
&& docker push "${IMAGE}:latest" \
|| echo "skipping 'latest' tag..."