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Implement suffix tree and suffix array construction algorithms #51

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krzysztof-turowski opened this issue Sep 14, 2023 · 0 comments
Open
10 tasks

Implement suffix tree and suffix array construction algorithms #51

krzysztof-turowski opened this issue Sep 14, 2023 · 0 comments
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documentation Improvements or additions to documentation enhancement New feature or request

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@krzysztof-turowski
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krzysztof-turowski commented Sep 14, 2023 •
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Example publications for suffix tree:

  • Breslauer, Italiano - Near real-time suffix tree construction via the fringe marked ancestor problem
  • Giegerich, Kurtz, Stoye - Efficient implementation of lazy suffix trees
  • Andersson, Nilsson - Efficient Implementation of Suffix Trees

Example publications for suffix array:

  • Sadakane - A Fast Algorithm for Making Suffix Arrays and for Burrows-Wheeler Transformation,
  • Nong - Practical Linear-Time O(1)-Workspace Suffix Sorting for Constant Alphabets,
  • Kim, Sim, Park, Park - Linear-time construction of suffix arrays,
  • Rajasekaran, Nicolae - An elegant algorithm for the construction of suffix arrays,
  • Abouelhoda, Kurtz, Ohlebusch - Replacing suffix trees with enhanced suffix arrays,
  • Manzini, Ferragina - Engineering a Lightweight Suffix Array Construction Algorithm,
  • Itoh, Tanaka - An efficient method for in memory construction of suffix arrays.
@krzysztof-turowski krzysztof-turowski added documentation Improvements or additions to documentation enhancement New feature or request labels Sep 14, 2023
@krzysztof-turowski krzysztof-turowski changed the title Implement suffix array construction algorithms Implement suffix tree and suffix array construction algorithms Sep 15, 2023
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