CommonUseCases

List of common use cases

This is a list of common use cases, which are or should/will be supported by libaas.

Amino acid sequence

Create an amino acid sequence

Add a modification

Remove a modification

Retrieve the stoichiometry

Residue

Create a residue

Set/Change the amino acid

Set/Change the modification

Retrieve the stoichiometry

Amino acid

Add a custom amino acid

Set a stoichiometry configuration (in order to use custom elements)

Retrieve the stoichiometry

Modification

Use a standard modification

Create a custom modification

Add a custom specificity

Use a custom modification

Retrieve the stoichiometry

Raw modification

Retrieve a standard modification

Create a custom modification

Add a custom specificity

Add a custom modification

Retrieve a custom modification

Retrieve the stoichiometry

Set a stoichiometry configuration

in order to use custom elements

Specificity

Create a custom specificity

Stoichiometry

Add a stoichiometry entry

Retrieve a stoichiometry entry

Stoichiometry configuration

Retrieve default stoichiometry configuration

Create a custom stoichiometry configuration

Elements

Retrieve a standard element

Create a custom element

Add a custom element

Retrieve a custom element

Isotope

Create an isotope