From 83dda43990dc17b83c32983b7339aabbd17ab52c Mon Sep 17 00:00:00 2001 From: koehlek99 Date: Tue, 8 Jun 2021 15:08:02 +0200 Subject: [PATCH 1/3] fixed get_refsample path --- snakefile_GE_analysis.smk | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/snakefile_GE_analysis.smk b/snakefile_GE_analysis.smk index 3335075..d01dc78 100644 --- a/snakefile_GE_analysis.smk +++ b/snakefile_GE_analysis.smk @@ -9,7 +9,7 @@ samples.index.names = ["sample_id"] validate(samples, schema="workflow/schemas/samples.schema.yaml") def get_refsample(refsample): - return "results/intermediate/body/fft_summaries/fft_{}-{}_WPS.tsv.gz".format(refsample,samples["genome_build"].loc[samples["sample"] == refsample].values[0]) + return "results/intermediate/{ID}/FFT_table/transcriptanno-{SAMPLE}-FFT_table.{GENOME}.tsv".format(ID = samples["ID"].loc[samples["sample"] == refsample].values[0], SAMPLE = refsample, GENOME = samples["genome_build"].loc[samples["sample"] == refsample].values[0]) rule all: input: From 55e4c464dd7a592dfb6236698f3daf7c677be2b4 Mon Sep 17 00:00:00 2001 From: sroener <40714954+sroener@users.noreply.github.com> Date: Tue, 8 Jun 2021 15:14:00 +0200 Subject: [PATCH 2/3] added __pycache__ --- .gitignore | 1 + 1 file changed, 1 insertion(+) diff --git a/.gitignore b/.gitignore index e72e070..791308b 100644 --- a/.gitignore +++ b/.gitignore @@ -38,3 +38,4 @@ !CHANGELOG.md !*.smk *.code-workspace +__pycache__ From 824819791dc43f4d1efa3bc48490dac8a72e2528 Mon Sep 17 00:00:00 2001 From: sroener <40714954+sroener@users.noreply.github.com> Date: Tue, 8 Jun 2021 15:19:15 +0200 Subject: [PATCH 3/3] update hotfix v0.3.2 --- CHANGELOG.md | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 9cf1a65..d8ef88d 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,6 +2,16 @@ ## develop +## v0.3.2 + +- Hotfix: fixed bug in get_refsample + +- update .gitignore + +## v0.3.1 + +- Hotfix: unexpected behavior in conda environments + ## v0.3.0 - updated documentation