.travis.yml

dist: bionic
language: python
python:
  - "3.6"
  - "3.8"
before_install:
  - if [[ "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then
      wget https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh;
    else
      wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
    fi
  - bash miniconda.sh -b -p $HOME/miniconda
  - export PATH="$HOME/miniconda/bin:$PATH"
  # reset the shell's lookup table for program name to path mappings
  - hash -r
  - conda config --set always_yes yes --set changeps1 no
  - conda update -q conda
  # Useful for debugging any issues with conda
  - conda info -a
  - free -m
addons:
  apt:
    packages:
      - pandoc
install:
  - >
      conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION
      numpy scipy nose pandas matplotlib mkl-service 'tensorflow>=2.2.0'
      pypandoc sphinx numpydoc
  - source activate test-environment
  - pip install nose-timer
  - pip install -r requirements.txt
  - pip install -r docs/requirements.txt
  - pip install .
  - pip freeze
env:
  global:
    - PYTHONHASHSEED=0
    - KERAS_BACKEND=tensorflow
    - KMP_SETTINGS=TRUE
    - OMP_NUM_THREADS=1

script:
  # download data and models, then run tests
  - mkdir -p /tmp/downloads
  # We download using wget to avoid sporadic SSL error on travis from Python.
  -
    wget
      $(mhcflurry-downloads url data_curated)
      $(mhcflurry-downloads url data_mass_spec_annotated)
      $(mhcflurry-downloads url models_class1)
      $(mhcflurry-downloads url models_class1_presentation)
      $(mhcflurry-downloads url models_class1_processing)
      $(mhcflurry-downloads url models_class1_pan)
      $(mhcflurry-downloads url allele_sequences)
      -P /tmp/downloads
  - ls -lh /tmp/downloads
  -
    mhcflurry-downloads fetch
      data_curated
      data_mass_spec_annotated
      models_class1
      models_class1_presentation
      models_class1_processing
      models_class1_pan
      allele_sequences
      --already-downloaded-dir /tmp/downloads
  - mhcflurry-downloads fetch  # Won't download anything, just checking it runs
  - mhcflurry-downloads info   # Also just to test this command works
  - nosetests --with-timer -sv test

deploy:
  provider: pypi
  skip_existing: true
  distributions: sdist bdist_wheel
  username: __token__
  on:
    tags: true
  password:
    secure: 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