From 95131e22749060b6725d0bd133c131c4217c90a8 Mon Sep 17 00:00:00 2001 From: DerThorsten Date: Mon, 29 Apr 2019 10:47:03 +0200 Subject: [PATCH 1/4] removed precission --- FactorNet/CTCF/metaGENCODE_RNAseq_Unique35_DGF/model.yaml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/FactorNet/CTCF/metaGENCODE_RNAseq_Unique35_DGF/model.yaml b/FactorNet/CTCF/metaGENCODE_RNAseq_Unique35_DGF/model.yaml index dc70bc593..09b7b0141 100644 --- a/FactorNet/CTCF/metaGENCODE_RNAseq_Unique35_DGF/model.yaml +++ b/FactorNet/CTCF/metaGENCODE_RNAseq_Unique35_DGF/model.yaml @@ -83,4 +83,5 @@ schema: test: expect: url: https://s3.eu-central-1.amazonaws.com/kipoi-models/predictions/14f9bf4b49e21c7b31e8f6d6b9fc69ed88e25f43/FactorNet/CTCF/metaGENCODE_RNAseq_Unique35_DGF/predictions.h5 - md5: c168e8b807823c522144cc28b024c9f0 \ No newline at end of file + md5: c168e8b807823c522144cc28b024c9f0 + precision_decimal: 6 \ No newline at end of file From d3a4d8837c9b5c6c9b245dd9a4469e7a6cc845e4 Mon Sep 17 00:00:00 2001 From: DerThorsten Date: Mon, 29 Apr 2019 10:48:55 +0200 Subject: [PATCH 2/4] removed py35 dep --- FactorNet/CTCF/metaGENCODE_RNAseq_Unique35_DGF/model.yaml | 2 -- 1 file changed, 2 deletions(-) diff --git a/FactorNet/CTCF/metaGENCODE_RNAseq_Unique35_DGF/model.yaml b/FactorNet/CTCF/metaGENCODE_RNAseq_Unique35_DGF/model.yaml index 09b7b0141..c2a438e6e 100644 --- a/FactorNet/CTCF/metaGENCODE_RNAseq_Unique35_DGF/model.yaml +++ b/FactorNet/CTCF/metaGENCODE_RNAseq_Unique35_DGF/model.yaml @@ -57,8 +57,6 @@ info: - DNA binding default_dataloader: . dependencies: - conda: - - python=3.5 pip: - tensorflow>=1.4.1 - keras>=2.0.4,<2.2.0 From 8ae04cd74712e0527fb482cdadcdd3f8cd0c8fc2 Mon Sep 17 00:00:00 2001 From: DerThorsten Date: Mon, 29 Apr 2019 11:01:57 +0200 Subject: [PATCH 3/4] fixed dataloader --- FactorNet/CTCF/metaGENCODE_RNAseq_Unique35_DGF/dataloader.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/FactorNet/CTCF/metaGENCODE_RNAseq_Unique35_DGF/dataloader.py b/FactorNet/CTCF/metaGENCODE_RNAseq_Unique35_DGF/dataloader.py index 463d66275..538e1f5c2 100644 --- a/FactorNet/CTCF/metaGENCODE_RNAseq_Unique35_DGF/dataloader.py +++ b/FactorNet/CTCF/metaGENCODE_RNAseq_Unique35_DGF/dataloader.py @@ -12,8 +12,8 @@ from kipoi.data import Dataset from kipoi.metadata import GenomicRanges from kipoi.specs import RemoteFile -from kipoi.external.torchvision.dataset_utils import download_url -from kipoi.utils import makedir_exist_ok +from kipoi_utils.external.torchvision.dataset_utils import download_url +from kipoi_utils.utils import makedir_exist_ok import linecache from six.moves.urllib.request import urlretrieve From b9b475258a19094c12cc0a9815ce7a47a025acb7 Mon Sep 17 00:00:00 2001 From: DerThorsten Date: Mon, 29 Apr 2019 12:51:27 +0200 Subject: [PATCH 4/4] trigger build