diff --git a/DeepCpG_DNA/Hou2016_HepG2_dna/dataloader.yaml b/DeepCpG_DNA/Hou2016_HepG2_dna/dataloader.yaml
index e3b18d55b..15e2427b4 100644
--- a/DeepCpG_DNA/Hou2016_HepG2_dna/dataloader.yaml
+++ b/DeepCpG_DNA/Hou2016_HepG2_dna/dataloader.yaml
@@ -12,12 +12,11 @@ args:
 defined_as: dataloader.py::SeqDataset
 dependencies:
   conda:
-  - bioconda::genomelake==0.1.4
-  - bioconda::pybedtools
-  - python=3.5
-  - numpy
-  - pandas
-  - cython
+    - bioconda::genomelake=0.1.4
+    - bioconda::pybedtools=0.8.1
+    - python=3.6
+    - numpy=1.19.2
+    - pandas=1.1.3
 info:
   authors:
   - github: avsecz
diff --git a/DeepCpG_DNA/Hou2016_HepG2_dna/model.yaml b/DeepCpG_DNA/Hou2016_HepG2_dna/model.yaml
index 965e8f654..f4f16cd79 100644
--- a/DeepCpG_DNA/Hou2016_HepG2_dna/model.yaml
+++ b/DeepCpG_DNA/Hou2016_HepG2_dna/model.yaml
@@ -10,13 +10,12 @@ args:
 default_dataloader: .
 dependencies:
   conda:
-    - python=3.5
+    - python=3.6
     - h5py=2.10.0
     - pip=20.2.4
   pip:
     - tensorflow==1.10.0
     - keras==1.2.2
-    - deepcpg==1.0.4
 info:
   authors:
   - github: cangermueller
diff --git a/DeepCpG_DNA/Hou2016_mESC_dna/dataloader.yaml b/DeepCpG_DNA/Hou2016_mESC_dna/dataloader.yaml
index e3b18d55b..15e2427b4 100644
--- a/DeepCpG_DNA/Hou2016_mESC_dna/dataloader.yaml
+++ b/DeepCpG_DNA/Hou2016_mESC_dna/dataloader.yaml
@@ -12,12 +12,11 @@ args:
 defined_as: dataloader.py::SeqDataset
 dependencies:
   conda:
-  - bioconda::genomelake==0.1.4
-  - bioconda::pybedtools
-  - python=3.5
-  - numpy
-  - pandas
-  - cython
+    - bioconda::genomelake=0.1.4
+    - bioconda::pybedtools=0.8.1
+    - python=3.6
+    - numpy=1.19.2
+    - pandas=1.1.3
 info:
   authors:
   - github: avsecz
diff --git a/DeepCpG_DNA/Hou2016_mESC_dna/model.yaml b/DeepCpG_DNA/Hou2016_mESC_dna/model.yaml
index a103d5c89..bf59e3ac8 100644
--- a/DeepCpG_DNA/Hou2016_mESC_dna/model.yaml
+++ b/DeepCpG_DNA/Hou2016_mESC_dna/model.yaml
@@ -10,13 +10,12 @@ args:
 default_dataloader: .
 dependencies:
   conda:
-    - python=3.5
+    - python=3.6
     - h5py=2.10.0
     - pip=20.2.4
   pip:
     - tensorflow==1.10.0
     - keras==1.2.2
-    - deepcpg==1.0.4
 info:
   authors:
   - github: cangermueller
diff --git a/DeepCpG_DNA/Smallwood2014_2i_dna/dataloader.yaml b/DeepCpG_DNA/Smallwood2014_2i_dna/dataloader.yaml
index e3b18d55b..15e2427b4 100644
--- a/DeepCpG_DNA/Smallwood2014_2i_dna/dataloader.yaml
+++ b/DeepCpG_DNA/Smallwood2014_2i_dna/dataloader.yaml
@@ -12,12 +12,11 @@ args:
 defined_as: dataloader.py::SeqDataset
 dependencies:
   conda:
-  - bioconda::genomelake==0.1.4
-  - bioconda::pybedtools
-  - python=3.5
-  - numpy
-  - pandas
-  - cython
+    - bioconda::genomelake=0.1.4
+    - bioconda::pybedtools=0.8.1
+    - python=3.6
+    - numpy=1.19.2
+    - pandas=1.1.3
 info:
   authors:
   - github: avsecz
diff --git a/DeepCpG_DNA/Smallwood2014_2i_dna/model.yaml b/DeepCpG_DNA/Smallwood2014_2i_dna/model.yaml
index d7024abd8..c871d8990 100644
--- a/DeepCpG_DNA/Smallwood2014_2i_dna/model.yaml
+++ b/DeepCpG_DNA/Smallwood2014_2i_dna/model.yaml
@@ -10,13 +10,12 @@ args:
 default_dataloader: .
 dependencies:
   conda:
-    - python=3.5
+    - python=3.6
     - h5py=2.10.0
     - pip=20.2.4
   pip:
     - tensorflow==1.10.0
     - keras==1.2.2
-    - deepcpg==1.0.4
 info:
   authors:
   - github: cangermueller
diff --git a/DeepCpG_DNA/Smallwood2014_serum_dna/dataloader.yaml b/DeepCpG_DNA/Smallwood2014_serum_dna/dataloader.yaml
index e3b18d55b..15e2427b4 100644
--- a/DeepCpG_DNA/Smallwood2014_serum_dna/dataloader.yaml
+++ b/DeepCpG_DNA/Smallwood2014_serum_dna/dataloader.yaml
@@ -12,12 +12,11 @@ args:
 defined_as: dataloader.py::SeqDataset
 dependencies:
   conda:
-  - bioconda::genomelake==0.1.4
-  - bioconda::pybedtools
-  - python=3.5
-  - numpy
-  - pandas
-  - cython
+    - bioconda::genomelake=0.1.4
+    - bioconda::pybedtools=0.8.1
+    - python=3.6
+    - numpy=1.19.2
+    - pandas=1.1.3
 info:
   authors:
   - github: avsecz
diff --git a/DeepCpG_DNA/Smallwood2014_serum_dna/model.yaml b/DeepCpG_DNA/Smallwood2014_serum_dna/model.yaml
index 9ff5419cc..45ddf7ac7 100644
--- a/DeepCpG_DNA/Smallwood2014_serum_dna/model.yaml
+++ b/DeepCpG_DNA/Smallwood2014_serum_dna/model.yaml
@@ -10,13 +10,12 @@ args:
 default_dataloader: .
 dependencies:
   conda:
-    - python=3.5
+    - python=3.6
     - h5py=2.10.0
     - pip=20.2.4
   pip:
     - tensorflow==1.10.0
     - keras==1.2.2
-    - deepcpg==1.0.4
 info:
   authors:
   - github: cangermueller
diff --git a/DeepCpG_DNA/template/dataloader.yaml b/DeepCpG_DNA/template/dataloader.yaml
index 5bbcfc351..7436e625e 100644
--- a/DeepCpG_DNA/template/dataloader.yaml
+++ b/DeepCpG_DNA/template/dataloader.yaml
@@ -16,12 +16,11 @@ info:
   doc: Dataloader for the DeepCpG.
 dependencies:
   conda:
-    - bioconda::genomelake==0.1.4
-    - bioconda::pybedtools
-    - python=3.5
-    - numpy
-    - pandas
-    - cython
+    - bioconda::genomelake=0.1.4
+    - bioconda::pybedtools=0.8.1
+    - python=3.6
+    - numpy=1.19.2
+    - pandas=1.1.3
 output_schema:
   inputs:
     dna:
diff --git a/DeepCpG_DNA/template/model_template.yaml b/DeepCpG_DNA/template/model_template.yaml
index 4909b4025..5a4bb1bde 100644
--- a/DeepCpG_DNA/template/model_template.yaml
+++ b/DeepCpG_DNA/template/model_template.yaml
@@ -23,13 +23,12 @@ info:
 default_dataloader: .
 dependencies:
   conda:
-    - python=3.5
+    - python=3.6
     - h5py=2.10.0
     - pip=20.2.4
   pip:
     - tensorflow==1.10.0
     - keras==1.2.2
-    - deepcpg==1.0.4
 schema:
   inputs:
     dna: