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I found the download link for "gtf file, fasta file" needed to reproduce the tf-binding from /src/splicing/download_annotation.smk, and changed the name and moved to the corresponding path, followed by "tf-binding" running snakemake and found that the 106th line in "/tf-binding/snakemake" has a more symbol, as shown in the following figure.
Later I used this method to install synapse, continue to execute snakemake, but and the error is as follows:
Sincerely hope to get your reply, thank you very much!
The text was updated successfully, but these errors were encountered:
Licko0909
changed the title
When I reproduce the /manuscript/tf-binding,an error occurred “synapse: command not found”
When I reproduce the /manuscript/tf-binding,an error occurred “Unknown option --downloadLocation”
Feb 28, 2019
I found the download link for "gtf file, fasta file" needed to reproduce the tf-binding from
/src/splicing/download_annotation.smk
, and changed the name and moved to the corresponding path, followed by "tf-binding" running snakemake and found that the 106th line in "/tf-binding/snakemake" has a more symbol, as shown in the following figure.After the correction, the program finally ran, but I was in trouble again, showing
synapse: command not found
, I checked and I am not sure if I need to [install synapse](https://askubuntu.com/questions/577711/how-to-install-synapse-in-ubuntu-14-04)--------------------------------Update-------------------------
Later I used this method to install
synapse
, continue to execute snakemake, but and the error is as follows:Sincerely hope to get your reply, thank you very much!
The text was updated successfully, but these errors were encountered: