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Does kipoi-veff2 for DeepBind and DeepSEA support hg38? #43

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robertzeibich opened this issue Jan 17, 2023 · 0 comments
Open

Does kipoi-veff2 for DeepBind and DeepSEA support hg38? #43

robertzeibich opened this issue Jan 17, 2023 · 0 comments

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@robertzeibich
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robertzeibich commented Jan 17, 2023 •
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"To query variant effect predictions, upload a VCF file or paste below. To query DNA sequence feature predictions, upload a FASTA file (DNA sequence) or a BED file (chromatin regions - hg19 coordinates) or paste below."

Does kipoi-veff2 for DeepBind and DeepSEA support hg38?
I used a FASTA and VCF hg38.

There is also a website - https://hb.flatironinstitute.org/deepsea/ which offers a choice.
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