From 4fc9830ee74cd02e5de3bbe41ef132ec76a68249 Mon Sep 17 00:00:00 2001 From: Ali Khan Date: Mon, 18 Nov 2024 11:06:30 -0500 Subject: [PATCH] update to latest dcm2niix use heudiconv fork with unstacked dcm commit This uses the latest heudiconv and cherry-picks the commit from AlanKuurstra: support extended metadata from single unstacked dicom, dimension > 3 --- Dockerfile | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/Dockerfile b/Dockerfile index 68c257c..7f53247 100644 --- a/Dockerfile +++ b/Dockerfile @@ -2,10 +2,11 @@ FROM debian:bullseye LABEL maintainer="" # dcm2niix version -ENV DCM2NIIXTAG v1.0.20230411 +ENV DCM2NIIXTAG v1.0.20240202 #heudiconv version: -ENV HEUDICONVTAG unstacked_dcm +ENV HEUDICONVOWNER akhanf +ENV HEUDICONVTAG v1.3.2+enhdicom.0 #bids validator version: ENV BIDSTAG 1.9.7 @@ -44,7 +45,7 @@ RUN apt-get update -qq \ git \ python3-setuptools \ && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* \ - && git clone https://github.com/AlanKuurstra/heudiconv.git /src/heudiconv \ + && git clone https://github.com/${HEUDICONVOWNER}/heudiconv.git /src/heudiconv \ && git -C /src/heudiconv checkout ${HEUDICONVTAG} WORKDIR /src/heudiconv RUN python3 -m pip install --no-cache-dir -r /src/heudiconv/requirements.txt \