diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index a7ffdebc..57399fd6 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -76,9 +76,16 @@ jobs:
           HYPOTHESIS_PROFILE: pr
         run: >-
           poetry run pytest -n auto --splits 5 --group ${{ matrix.split }}
+          --cov=snakebids
           --doctest-modules --ignore=docs
           --ignore=snakebids/project_template --benchmark-disable
 
+      - name: Upload coverage reports to Codecov
+        uses: codecov/codecov-action@v3
+        env:
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+
+
   deployment_on_base:
     runs-on: ubuntu-latest
     if: ${{ contains(github.event_name, 'pull_request') }}
diff --git a/poetry.lock b/poetry.lock
index 140c1410..d58372e6 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -313,6 +313,73 @@ pyyaml-include = ">=1.2"
 questionary = ">=1.8.1"
 typing-extensions = {version = ">=3.7.4,<5.0.0", markers = "python_version < \"3.9\""}
 
+[[package]]
+name = "coverage"
+version = "7.3.3"
+description = "Code coverage measurement for Python"
+optional = false
+python-versions = ">=3.8"
+files = [
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+    {file = "coverage-7.3.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:ee6621dccce8af666b8c4651f9f43467bfbf409607c604b840b78f4ff3619aeb"},
+    {file = "coverage-7.3.3-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:1367aa411afb4431ab58fd7ee102adb2665894d047c490649e86219327183134"},
+    {file = "coverage-7.3.3-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:1f0f8f0c497eb9c9f18f21de0750c8d8b4b9c7000b43996a094290b59d0e7523"},
+    {file = "coverage-7.3.3-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:db0338c4b0951d93d547e0ff8d8ea340fecf5885f5b00b23be5aa99549e14cfd"},
+    {file = "coverage-7.3.3-cp310-cp310-musllinux_1_1_aarch64.whl", hash = "sha256:d31650d313bd90d027f4be7663dfa2241079edd780b56ac416b56eebe0a21aab"},
+    {file = "coverage-7.3.3-cp310-cp310-musllinux_1_1_i686.whl", hash = "sha256:9437a4074b43c177c92c96d051957592afd85ba00d3e92002c8ef45ee75df438"},
+    {file = "coverage-7.3.3-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:9e17d9cb06c13b4f2ef570355fa45797d10f19ca71395910b249e3f77942a837"},
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+    {file = "coverage-7.3.3-cp310-cp310-win_amd64.whl", hash = "sha256:593efa42160c15c59ee9b66c5f27a453ed3968718e6e58431cdfb2d50d5ad284"},
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+    {file = "coverage-7.3.3-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f3bfd2c2f0e5384276e12b14882bf2c7621f97c35320c3e7132c156ce18436a1"},
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+    {file = "coverage-7.3.3-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:a702e66483b1fe602717020a0e90506e759c84a71dbc1616dd55d29d86a9b91f"},
+    {file = "coverage-7.3.3-cp39-cp39-win32.whl", hash = "sha256:7fbf3f5756e7955174a31fb579307d69ffca91ad163467ed123858ce0f3fd4aa"},
+    {file = "coverage-7.3.3-cp39-cp39-win_amd64.whl", hash = "sha256:cad9afc1644b979211989ec3ff7d82110b2ed52995c2f7263e7841c846a75348"},
+    {file = "coverage-7.3.3-pp38.pp39.pp310-none-any.whl", hash = "sha256:d299d379b676812e142fb57662a8d0d810b859421412b4d7af996154c00c31bb"},
+    {file = "coverage-7.3.3.tar.gz", hash = "sha256:df04c64e58df96b4427db8d0559e95e2df3138c9916c96f9f6a4dd220db2fdb7"},
+]
+
+[package.dependencies]
+tomli = {version = "*", optional = true, markers = "python_full_version <= \"3.11.0a6\" and extra == \"toml\""}
+
+[package.extras]
+toml = ["tomli"]
+
 [[package]]
 name = "datrie"
 version = "0.8.2"
@@ -1859,6 +1926,24 @@ aspect = ["aspectlib"]
 elasticsearch = ["elasticsearch"]
 histogram = ["pygal", "pygaljs"]
 
+[[package]]
+name = "pytest-cov"
+version = "4.1.0"
+description = "Pytest plugin for measuring coverage."
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "pytest-cov-4.1.0.tar.gz", hash = "sha256:3904b13dfbfec47f003b8e77fd5b589cd11904a21ddf1ab38a64f204d6a10ef6"},
+    {file = "pytest_cov-4.1.0-py3-none-any.whl", hash = "sha256:6ba70b9e97e69fcc3fb45bfeab2d0a138fb65c4d0d6a41ef33983ad114be8c3a"},
+]
+
+[package.dependencies]
+coverage = {version = ">=5.2.1", extras = ["toml"]}
+pytest = ">=4.6"
+
+[package.extras]
+testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtualenv"]
+
 [[package]]
 name = "pytest-mock"
 version = "3.12.0"
@@ -1970,7 +2055,6 @@ files = [
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@@ -1978,15 +2062,8 @@ files = [
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@@ -2003,7 +2080,6 @@ files = [
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@@ -2011,7 +2087,6 @@ files = [
     {file = "PyYAML-6.0.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:5773183b6446b2c99bb77e77595dd486303b4faab2b086e7b17bc6bef28865f6"},
     {file = "PyYAML-6.0.1-cp39-cp39-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:b786eecbdf8499b9ca1d697215862083bd6d2a99965554781d0d8d1ad31e13a0"},
     {file = "PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:bc1bf2925a1ecd43da378f4db9e4f799775d6367bdb94671027b73b393a7c42c"},
-    {file = "PyYAML-6.0.1-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:04ac92ad1925b2cff1db0cfebffb6ffc43457495c9b3c39d3fcae417d7125dc5"},
     {file = "PyYAML-6.0.1-cp39-cp39-win32.whl", hash = "sha256:faca3bdcf85b2fc05d06ff3fbc1f83e1391b3e724afa3feba7d13eeab355484c"},
     {file = "PyYAML-6.0.1-cp39-cp39-win_amd64.whl", hash = "sha256:510c9deebc5c0225e8c96813043e62b680ba2f9c50a08d3724c7f28a747d1486"},
     {file = "PyYAML-6.0.1.tar.gz", hash = "sha256:bfdf460b1736c775f2ba9f6a92bca30bc2095067b8a9d77876d1fad6cc3b4a43"},
@@ -2941,4 +3016,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.8,<3.13"
-content-hash = "1f089de40b77f3ccf219e47797fd31f7c2609f55f534d6ae714f912689e2b0a4"
+content-hash = "f1c1986e710fea1767159d0aaeee1aa2fa3859d81d6afca7de47de5d27d94bd5"
diff --git a/pyproject.toml b/pyproject.toml
index 18564cb3..e6493ae8 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -86,6 +86,7 @@ pytest-xdist = "^3.3.1"
 pytest-split = "^0.8.1"
 tomli = "^2.0.1"
 requests-mock = "^1.11.0"
+pytest-cov = "^4.1.0"
 
 [tool.poetry.scripts]
 snakebids = "snakebids.admin:main"
@@ -123,6 +124,12 @@ markers = [
     "docker: marks tests as requiring docker (deselect with '-m \"not docker\"')",
 ]
 
+[tool.coverage.run]
+omit = [
+    "snakebids/project_template",
+    "snakebids/tests",
+]
+
 [tool.isort]
 profile = "black"
 multi_line_output = 3