diff --git a/.dryrun_test_all.sh b/.dryrun_test_all.sh index 74a3c865..4dccdf95 100755 --- a/.dryrun_test_all.sh +++ b/.dryrun_test_all.sh @@ -10,8 +10,8 @@ hippunfold test_data/bids_hippb500 test_out participant -np --modality hippb500 hippunfold test_data/bids_T1w_longitudinal test_out participant -np --modality T1w hippunfold test_data/bids_singleT2w_longitudinal test_out participant -np --modality T2w hippunfold test_data/bids_segT2w test_out participant -np --modality segT2w -hippunfold - test_out participant -np --modality cropseg --path_cropseg test_data/data_cropseg/sub-{subject}_hemi-{hemi}_dseg.nii.gz -hippunfold - test_out participant -np --modality cropseg --path_cropseg test_data/data_cropseg_1hemi/sub-{subject}_hemi-{hemi}_dseg.nii.gz --hemi L +hippunfold . test_out participant -np --modality cropseg --path_cropseg test_data/data_cropseg/sub-{subject}_hemi-{hemi}_dseg.nii.gz +hippunfold . test_out participant -np --modality cropseg --path_cropseg test_data/data_cropseg_1hemi/sub-{subject}_hemi-{hemi}_dseg.nii.gz --hemi L hippunfold test_data/bids_singleT2w test_out participant -np --modality T2w --t1_reg_template hippunfold test_data/bids_singleT2w test_out participant -np --modality T2w --output_space T1w hippunfold test_data/bids_T1w test_out participant -np --modality T1w --use-template-seg diff --git a/hippunfold/workflow/rules/preproc_t1.smk b/hippunfold/workflow/rules/preproc_t1.smk index c9140272..de65340e 100644 --- a/hippunfold/workflow/rules/preproc_t1.smk +++ b/hippunfold/workflow/rules/preproc_t1.smk @@ -297,7 +297,7 @@ rule warp_t1_to_corobl_crop: root=work, datatype="anat", **config["subj_wildcards"], - suffix="{modality}.nii.gz", + suffix="T1w.nii.gz", space="corobl", desc="preproc", hemi="{hemi,L|R}"