From 16b99047f85332ba0c0d0c7fe57381dc50d77006 Mon Sep 17 00:00:00 2001 From: Dhananjhay Date: Thu, 19 Dec 2024 16:15:19 -0500 Subject: [PATCH] remove version pinnings --- hippunfold/workflow/envs/env1.yaml | 5 +- hippunfold/workflow/envs/env10.yaml | 2 +- hippunfold/workflow/envs/env11.yaml | 2 +- hippunfold/workflow/envs/env13.yaml | 6 +- hippunfold/workflow/envs/env15.yaml | 6 +- hippunfold/workflow/envs/env3.yaml | 6 +- hippunfold/workflow/envs/env9.yaml | 6 +- hippunfold/workflow/envs/envAll.yaml | 131 --------------------------- 8 files changed, 17 insertions(+), 147 deletions(-) delete mode 100644 hippunfold/workflow/envs/envAll.yaml diff --git a/hippunfold/workflow/envs/env1.yaml b/hippunfold/workflow/envs/env1.yaml index 8efea764..eaf31ac0 100644 --- a/hippunfold/workflow/envs/env1.yaml +++ b/hippunfold/workflow/envs/env1.yaml @@ -4,5 +4,6 @@ channels: - defaults dependencies: - python=3.9 - - nibabel=5.2.1 - - numpy=2.1.2 \ No newline at end of file + - nibabel>=5.3.2,<6.0.0 + - numpy + - astropy \ No newline at end of file diff --git a/hippunfold/workflow/envs/env10.yaml b/hippunfold/workflow/envs/env10.yaml index 0379dce7..bb18f72f 100644 --- a/hippunfold/workflow/envs/env10.yaml +++ b/hippunfold/workflow/envs/env10.yaml @@ -5,5 +5,5 @@ channels: dependencies: - python=3.9 - matplotlib - - pandas=2.2.3 + - pandas - seaborn \ No newline at end of file diff --git a/hippunfold/workflow/envs/env11.yaml b/hippunfold/workflow/envs/env11.yaml index 0c3e3a2e..dbb1e0a6 100644 --- a/hippunfold/workflow/envs/env11.yaml +++ b/hippunfold/workflow/envs/env11.yaml @@ -4,4 +4,4 @@ channels: - defaults dependencies: - python=3.9 - - pandas=2.2.3 \ No newline at end of file + - pandas \ No newline at end of file diff --git a/hippunfold/workflow/envs/env13.yaml b/hippunfold/workflow/envs/env13.yaml index 1b807d54..1dbce7b5 100644 --- a/hippunfold/workflow/envs/env13.yaml +++ b/hippunfold/workflow/envs/env13.yaml @@ -4,6 +4,6 @@ channels: - defaults dependencies: - python=3.9 - - nibabel=5.2.1 - - numpy=2.1.2 - - scipy=1.13.1 + - nibabel>=5.3.2,<6.0.0 + - numpy + - scipy diff --git a/hippunfold/workflow/envs/env15.yaml b/hippunfold/workflow/envs/env15.yaml index 6c6e9880..aceaedb8 100644 --- a/hippunfold/workflow/envs/env15.yaml +++ b/hippunfold/workflow/envs/env15.yaml @@ -4,7 +4,7 @@ channels: - defaults dependencies: - python=3.9 - - nibabel=5.2.1 - - numpy=2.1.2 - - scipy=1.13.1 + - nibabel>=5.3.2,<6.0.0 + - numpy + - scipy - naturalneighbor \ No newline at end of file diff --git a/hippunfold/workflow/envs/env3.yaml b/hippunfold/workflow/envs/env3.yaml index db9413e4..80a24936 100644 --- a/hippunfold/workflow/envs/env3.yaml +++ b/hippunfold/workflow/envs/env3.yaml @@ -4,6 +4,6 @@ channels: - defaults dependencies: - python=3.9 - - nibabel=5.2.1 - - numpy=2.1.2 - - scipy=1.13.1 \ No newline at end of file + - nibabel>=5.3.2,<6.0.0 + - numpy + - scipy \ No newline at end of file diff --git a/hippunfold/workflow/envs/env9.yaml b/hippunfold/workflow/envs/env9.yaml index 0ac11a01..e4663320 100644 --- a/hippunfold/workflow/envs/env9.yaml +++ b/hippunfold/workflow/envs/env9.yaml @@ -4,6 +4,6 @@ channels: - defaults dependencies: - python=3.9 - - nibabel=5.2.1 - - numpy=2.1.2 - - pandas=2.2.3 \ No newline at end of file + - nibabel>=5.3.2,<6.0.0 + - numpy + - pandas \ No newline at end of file diff --git a/hippunfold/workflow/envs/envAll.yaml b/hippunfold/workflow/envs/envAll.yaml deleted file mode 100644 index 9a6dc006..00000000 --- a/hippunfold/workflow/envs/envAll.yaml +++ /dev/null @@ -1,131 +0,0 @@ -channels: -- conda-forge -- defaults -dependencies: -- python=3.9 -- annotated-types=0.7.0 -- appdirs=1.4.4 -- argparse-dataclass=2.0.0 -- arrow=1.3.0 -- astor=0.8.1 -- astroid=2.15.8 -- atomicwrites=1.4.1 -- attrs=23.2.0 -- bids-validator=1.14.6 -- black=22.12.0 -- boutiques=0.5.26 -- certifi=2024.7.4 -- charset-normalizer=3.3.2 -- click=8.1.7 -- colorama=0.4.6 -- conda-inject=1.3.2 -- configargparse=1.7 -- connection-pool=0.0.3 -- copier=9.3.1 -- datrie=0.8.2 -- dill=0.3.8 -- docopt=0.6.2 -- docutils=0.20.1 -- dpath=2.2.0 -- dunamai=1.22.0 -- eval-type-backport=0.2.0 -- fastjsonschema=2.20.0 -- flake8=4.0.1 -- formulaic=0.5.2 -- funcy=2.0 -- gitdb=4.0.11 -- gitpython=3.1.43 -- graphlib-backport=1.1.0 -- greenlet=3.0.3 -- humanfriendly=10.0 -- idna=3.7 -- immutables=0.21 -- importlib-metadata=8.1.0 -- importlib-resources=6.4.0 -- iniconfig=2.0.0 -- interface-meta=1.3.0 -- isort=5.13.2 -- jinja2=3.1.4 -- jinja2-ansible-filters=1.3.2 -- jinja2-time=0.2.0 -- jsonschema=4.23.0 -- jsonschema-specifications=2023.12.1 -- jupyter-core=5.7.2 -- lazy-loader=0.4 -- lazy-object-proxy=1.10.0 -- markupsafe=2.1.5 -- mccabe=0.6.1 -- more-itertools=9.1.0 -- mypy-extensions=1.0.0 -- nbformat=5.10.4 -- nibabel=5.2.1 -- num2words=0.5.13 -- numpy=2.1.2 -- packaging=23.2 -- pandas=2.2.3 -- pastel=0.2.1 -- pathspec=0.12.1 -- pkgutil-resolve-name=1.3.10 -- plac=1.4.3 -- platformdirs=4.2.2 -- pluggy=1.5.0 -- plumbum=1.9.0 -- poethepoet=0.10.0 -- prompt-toolkit=3.0.36 -- psutil=6.0.0 -- pulp=2.7.0 -- pvandyken-deprecated=0.0.4 -- py=1.11.0 -- pybids=0.16.5 -- pycodestyle=2.8.0 -- pydantic=2.9.2 -- pydantic-core=2.23.4 -- pyflakes=2.4.0 -- pygments=2.18.0 -- pygraphviz=1.7 -- pylint=2.17.7 -- pyreadline3=3.4.1 -- pytest=6.2.5 -- pytest-console-scripts=1.4.1 -- python-dateutil=2.9.0.post0 -- pytz=2024.1 -- pywin32=306 -- pyyaml=6.0.1 -- questionary=2.0.1 -- referencing=0.35.1 -- requests=2.32.3 -- reretry=0.11.8 -- rpds-py=0.19.0 -- ruamel-yaml=0.18.6 -- ruamel-yaml-clib=0.2.8 -- scipy=1.13.1 -- simplejson=3.19.2 -- six=1.16.0 -- smart-open=7.0.4 -- smmap=5.0.1 -- snakebids=0.13.1 -- snakefmt=0.8.0 -- snakemake=8.23.0 -- snakemake-interface-common=1.17.4 -- snakemake-interface-executor-plugins=9.3.2 -- snakemake-interface-report-plugins=1.1.0 -- snakemake-interface-storage-plugins=3.3.0 -- sqlalchemy=2.0.31 -- stopit=1.1.2 -- tabulate=0.9.0 -- termcolor=2.4.0 -- throttler=1.2.2 -- toml=0.10.2 -- tomli=2.0.1 -- tomlkit=0.13.0 -- toposort=1.10 -- traitlets=5.14.3 -- types-python-dateutil=2.9.0.20240316 -- typing-extensions=4.12.2 -- tzdata=2024.1 -- urllib3=2.2.2 -- wcwidth=0.2.13 -- wrapt=1.16.0 -- yte=1.5.4 -- zipp=3.19.2 -name: env1