-
Notifications
You must be signed in to change notification settings - Fork 1
/
.envtemplate
57 lines (50 loc) · 2.12 KB
/
.envtemplate
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
# Application
FLASK_APP="bids_form.py"
AUTOBIDS_SECRET_KEY="secret"
AUTOBIDS_LOG_LEVEL="INFO"
AUTOBIDS_ROOT_URL="autobidsportal"
# DICOM Server
AUTOBIDS_DICOM_SERVER_URL="ORTHANC@orthanc:4242"
AUTOBIDS_DICOM_SERVER_USERNAME="username"
AUTOBIDS_DICOM_SERVER_PASSWORD="password"
AUTOBIDS_DICOM_SERVER_TLS="true"
AUTOBIDS_DICOM_SERVER_STUDYINSTANCEUID_WILDCARD="false" # Falsy
AUTOBIDS_DICOM_PI_BLACKLIST = ""
# Apptainer Settings
AUTOBIDS_CFMM2TAR_PATH="/opt/apptainer-images/cfmm2tar_v1.1.1.sif"
AUTOBIDS_CFMM2TAR_BINDS="/cfmm2tar-download:/cfmm2tar-download,/tmp:/tmp"
AUTOBIDS_CFMM2TAR_DOWNLOAD_DIR="/cfmm2tar-download"
AUTOBIDS_CFMM2TAR_TIMEOUT="100000"
AUTOBIDS_TAR2BIDS_PATH="/opt/apptainer-images/tar2bids_v0.2.3.sif"
AUTOBIDS_TAR2BIDS_BINDS="/cfmm2tar-download:/cfmm2tar-download,/datasets:/datasets,/tmp:/tmp,/home:/home"
AUTOBIDS_TAR2BIDS_TEMP_DIR="/tmp"
AUTOBIDS_TAR2BIDS_DOWNLOAD_DIR="/datasets"
AUTOBIDS_TAR2BIDS_TIMEOUT=100000
AUTOBIDS_GRADCORRECT_PATH="/opt/apptainer-images/gradcorrect_v0.0.3a.sif"
AUTOBIDS_GRADCORRECT_BINDS="/cfmm2tar-download:/cfmm2tar-download,/tmp:/tmp,/datasets:/datasets,/appdata:/appdata"
AUTOBIDS_GRADCORRECT_COEFF_FILE='/appdata/coeff.grad'
AUTOBIDS_GRADCORRECT_TIMEOUT="100000"
# Services
REDIS_URL="redis://redis:6379"
SQLALCHEMY_DATABASE_URI="postgresql+psycopg2://postgres:example@postgres:5432"
SQLALCHEMY_TRACK_MODIFICATIONS="false"
DATALAD_SSH_IDENTITYFILE="/ssh/id_rsa"
AUTOBIDS_DATALAD_RIA_URL="ria+ssh://user@ria:2222/ria-store"
AUTOBIDS_DATALAD_RIA_TAR_ALIAS="tar-files"
AUTOBIDS_ARCHIVE_BASE_URL="user:archive:/archive"
AUTOBIDS_ARCHIVE_SSH_PORT="2222"
AUTOBIDS_ARCHIVE_SSH_KEY="/ssh/id_rsa"
AUTOBIDS_ARCHIVE_TIMEOUT="100000"
AUTOBIDS_HEURISTIC_GIT_URL="[email protected]:example/heuristics.git"
AUTOBIDS_HEURISTIC_REPO_PATH="/home"
AUTOBIDS_HEURISTIC_DIR_PATH="/home"
AUTOBIDS_MAIL_ENABLED="false"
AUTOBIDS_MAIL_SERVER="smtp.gmail.com"
AUTOBIDS_MAIL_PORT="465"
AUTOBIDS_MAIL_USE_TLS="false"
AUTOBIDS_MAIL_USE_SSL="true"
# Comma separated list of recipients
AUTOBIDS_MAIL_RECIPIENTS="email_recipients"
AUTOBIDS_MAIL_USERNAME="email"
AUTOBIDS_MAIL_PASSWORD="password"
AUTOBIDS_MAIL_SENDER="[email protected]"