pyproject.toml

[tool.poetry]
name = "pythondeps"
version = "0.1.0"
description = "Containerized python environment"
readme = "README.md"
license = "MIT"
authors = [
    "Ali Khan <alik@robarts.ca>"
]
classifiers = [
    "Programming Language :: Python :: 3",
    "Operating System :: OS Independent",
]

[tool.poetry.dependencies]
python = ">=3.11,<3.12"
snakemake = ">=8.0.0"
snakebids = ">=0.12.0"
pulp = "<2.8.0"
numpy = "^1.26.4"
dask = "^2024.2.0"
zarr = "^2.17.0"
scipy = "^1.12.0"
jupyterlab = "^4.1.1"
matplotlib = "^3.8.3"
scikit-image = "^0.22.0"
scikit-learn = "^1.4.1.post1"
seaborn = "^0.13.2"
stardist = "^0.8.5"
dask-image = "^2023.8.1"
ome-zarr = "^0.8.3"
ome-zarr-neuro = {git = "https://github.com/khanlab/ome-zarr-neuro", rev='main'}
attrs = "22.2.0"
sparse = "^0.15.1"
pandas = "^2.2.2"

[tool.poetry.scripts]
spimquant = "spimquant.run:main"


[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"