diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk index 48bcac9..c2ced46 100644 --- a/workflow/rules/common.smk +++ b/workflow/rules/common.smk @@ -128,7 +128,7 @@ def get_fiji_launcher_cmd(wildcards, output, threads, resources): def get_macro_args_bigstitcher(wildcards, input, output): return "{dataset_xml} {ds_x} {ds_y} {ds_z} {min_r}".format( - dataset_xml=input.dataset_xml, + dataset_xml=output.dataset_xml, ds_x=config["bigstitcher"]["calc_pairwise_shifts"]["downsample_in_x"], ds_y=config["bigstitcher"]["calc_pairwise_shifts"]["downsample_in_y"], ds_z=config["bigstitcher"]["calc_pairwise_shifts"]["downsample_in_z"],