From df01ad4a9bed11b4115f127801e6119587d17a84 Mon Sep 17 00:00:00 2001
From: akhanf <alik@robarts.ca>
Date: Fri, 23 Feb 2024 15:20:06 -0500
Subject: [PATCH] fix for tar inputs

bug introduced when renaming rules
---
 workflow/rules/common.smk | 2 +-
 workflow/rules/import.smk | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk
index c2ced46..d342c44 100644
--- a/workflow/rules/common.smk
+++ b/workflow/rules/common.smk
@@ -56,7 +56,7 @@ def get_input_dataset(wildcards):
 
     elif tarfile.is_tarfile(dataset_path):
         # dataset was a tar file, so point to the extracted folder
-        return rules.get_dataset.output.ome_dir.format(**wildcards)
+        return rules.extract_dataset.output.ome_dir.format(**wildcards)
 
     else:
         print(f"unsupported input: {dataset_path}")
diff --git a/workflow/rules/import.smk b/workflow/rules/import.smk
index 50cc684..d2e32fd 100644
--- a/workflow/rules/import.smk
+++ b/workflow/rules/import.smk
@@ -24,7 +24,7 @@ rule extract_dataset:
         bids(
             root="logs",
             subject="{subject}",
-            datatype="get_dataset",
+            datatype="extract_dataset",
             sample="{sample}",
             acq="{acq}",
             desc="raw",