diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 4cec0a3..be0829d 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -28,7 +28,7 @@ jobs: uses: snakemake/snakemake-github-action@v1.24.0 with: directory: . - stagein: "ls -a . && ls -a * && pip install --no-deps -r .github/snakemake_action_requirements.txt" + stagein: "pip install --no-deps -r .github/workflows/snakemake_action_requirements.txt" snakefile: workflow/Snakefile args: "--lint" @@ -44,7 +44,7 @@ jobs: uses: snakemake/snakemake-github-action@v1.24.0 with: directory: .test - stagein: "pip install --no-deps -r .github/snakemake_action_requirements.txt" + stagein: "pip install --no-deps -r .github/workflows/snakemake_action_requirements.txt" snakefile: workflow/Snakefile args: "--sdm apptainer --show-failed-logs --cores 1 --all-temp" @@ -52,6 +52,6 @@ jobs: uses: snakemake/snakemake-github-action@v1.24.0 with: directory: .test - stagein: "pip install --no-deps -r .github/snakemake_action_requirements.txt" + stagein: "pip install --no-deps -r .github/workflows/snakemake_action_requirements.txt" snakefile: workflow/Snakefile args: "--report report.zip"