diff --git a/workflow/Snakefile b/workflow/Snakefile index cd19ab3..c997f26 100644 --- a/workflow/Snakefile +++ b/workflow/Snakefile @@ -33,7 +33,7 @@ rule all: input: get_all_targets(), get_bids_toplevel_targets(), - get_qc_targets(), #need to skip this if using prestitched +# get_qc_targets(), #need to skip this if using prestitched localrule: True diff --git a/workflow/rules/import.smk b/workflow/rules/import.smk index d9db6f6..9fdb401 100644 --- a/workflow/rules/import.smk +++ b/workflow/rules/import.smk @@ -280,7 +280,7 @@ rule tif_to_zarr_gcs: ), group: "preproc" - threads: 8 + threads: 24 container: config["containers"]["spimprep"] script: