From 001a58589c568222978db62e8ea67871262b4925 Mon Sep 17 00:00:00 2001
From: Ali Khan <alik@robarts.ca>
Date: Wed, 3 Apr 2024 12:45:39 -0400
Subject: [PATCH] leave python 3.12 out, was failing tests

---
 .github/workflows/main.yml | 47 --------------------------------------
 .github/workflows/test.yml |  2 +-
 poetry.lock                |  7 +++---
 pyproject.toml             |  2 +-
 4 files changed, 5 insertions(+), 53 deletions(-)
 delete mode 100644 .github/workflows/main.yml

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
deleted file mode 100644
index a272261..0000000
--- a/.github/workflows/main.yml
+++ /dev/null
@@ -1,47 +0,0 @@
-name: Tests
-
-on:
-  push:
-    branches: [ main ]
-  pull_request:
-    branches: [ main ]
-
-jobs:
-  tests:
-    runs-on: ubuntu-latest
-    strategy:
-      max-parallel: 5
-
-    steps:
-    - uses: actions/checkout@v2
-    - name: Set up Python 3.11
-      uses: actions/setup-python@v2
-      with:
-        python-version: 3.11
-    - name: Add conda to system path
-      run: |
-        # $CONDA is an environment variable pointing to the root of the miniconda directory
-        echo $CONDA/bin >> $GITHUB_PATH
-    - name: Install dependencies
-      run: |
-        conda install -c conda-forge mamba
-        #    - name: Lint with flake8
-        #      run: |
-        #        mamba install flake8
-        #        # stop the build if there are Python syntax errors or undefined names
-        #        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
-        #        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-        #        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
-    - name: Setup snakemake and workflow dependencies
-      run: |
-        mamba install -c conda-forge -c bioconda pytest snakemake singularity snakefmt
-        pip install . 
-    - name: Lint with snakemake and snakefmt
-      run: |
-        snakemake --lint
-        snakefmt workflow
-    - name: Integration dry-run test
-      run: |
-        snakemake -np
-
-
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 7f57777..9303d03 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -24,7 +24,7 @@ jobs:
     needs: [quality]
     strategy:
       matrix:
-        python-version: ['3.11', '3.12']
+        python-version: ['3.11']
     steps:
       - name: Setup Python environments
         uses: khanlab/actions/.github/actions/action-setup_task-installPyProject@v0.3.6
diff --git a/poetry.lock b/poetry.lock
index fef566e..6a9d7f3 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1042,7 +1042,7 @@ files = [
 ]
 
 [package.dependencies]
-numpy = {version = ">=1.26.0,<2", markers = "python_version >= \"3.12\""}
+numpy = {version = ">=1.23.2,<2", markers = "python_version == \"3.11\""}
 python-dateutil = ">=2.8.2"
 pytz = ">=2020.1"
 tzdata = ">=2022.7"
@@ -1978,7 +1978,6 @@ jinja2-time = ">=0.2.0"
 lazy-loader = ">=0.3"
 more-itertools = ">=8"
 numpy = {version = ">=1.23.2", markers = "python_version >= \"3.11\""}
-pandas = {version = ">=2.1.1", markers = "python_version >= \"3.12\""}
 pvandyken-deprecated = "0.0.4"
 pybids = ">=0.16.0,<0.17"
 requests = ">=2.31.0"
@@ -2399,5 +2398,5 @@ pyyaml = ">=6.0,<7.0"
 
 [metadata]
 lock-version = "2.0"
-python-versions = ">=3.11,<3.13"
-content-hash = "24f62f8bc5131f965924128bec7533b22e50fdd72895677f1b9a9c6b4ef5b883"
+python-versions = ">=3.11,<3.12"
+content-hash = "788c23de2284f43514676c3ddec433aad3a9d41f8ed5e14082b832f3452d2ccc"
diff --git a/pyproject.toml b/pyproject.toml
index 85bfcac..7e9a78b 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -7,7 +7,7 @@ readme = "README.md"
 packages = []
 
 [tool.poetry.dependencies]
-python = ">=3.11,<3.13"
+python = ">=3.11,<3.12"
 snakemake = "<8.0.0"
 pulp = "2.7.0"
 snakebids = "0.11.0"