test.yml

---
name: Lint and test workflow
on:
  push:
    branches: ['*', '!push-action/*']
  pull_request:
    branches: ['*', '!push-action/*']
jobs:
  quality:
    name: Lint code
    if: github.event.pull_request.merged == false
    runs-on: ubuntu-latest
    steps:
      - name: Setup Python environment
        uses: khanlab/actions/.github/actions/action-setup_task-installPyProject@v0.3.6
        with:
          python-version: '3.11'
      - name: snakemake lint
        run: poetry run snakemake --lint
      - name: snakefmt
        run: poetry run snakefmt --check workflow
  test:
    runs-on: ubuntu-latest
    needs: [quality]
    strategy:
      matrix:
        python-version: ['3.11', '3.12']
    steps:
      - name: Setup Python environments
        uses: khanlab/actions/.github/actions/action-setup_task-installPyProject@v0.3.6
        with:
          python-version: ${{ matrix.python-version }}
          install-library: true
      - name: Integration dry-run test
        run: poetry run snakemake -np