From 1e3871f704af72889562f7188d0fc5abcb730325 Mon Sep 17 00:00:00 2001 From: Ali Khan Date: Fri, 27 Sep 2024 22:12:12 -0400 Subject: [PATCH] remove fiji and bigstitcher-fiji replaced with spark --- Dockerfile | 22 ---------------------- 1 file changed, 22 deletions(-) diff --git a/Dockerfile b/Dockerfile index d2c6d12..a0458dc 100644 --- a/Dockerfile +++ b/Dockerfile @@ -50,28 +50,6 @@ RUN cd /opt/BigStitcher-Spark && ./install -t 32 -m 128 ENV PATH $PATH:/opt/BigStitcher-Spark -# Install Fiji. -RUN mkdir /opt/fiji \ - && cd /opt/fiji \ - && wget -q https://downloads.imagej.net/fiji/archive/20240208-1017/fiji-nojre.zip \ - && unzip fiji-nojre.zip \ - && rm fiji-nojre.zip - -# Add fiji to the PATH -ENV PATH $PATH:/opt/fiji/Fiji.app - - -# Update URLs use https -RUN ImageJ-linux64 --update edit-update-site ImageJ https://update.imagej.net/ \ - && ImageJ-linux64 --update edit-update-site Fiji https://update.fiji.sc/ \ - && ImageJ-linux64 --update edit-update-site Java-8 https://sites.imagej.net/Java-8/ - - -#install bigstitcher -RUN ImageJ-linux64 --update add-update-site BigStitcher https://sites.imagej.net/BigStitcher/ \ - && ImageJ-linux64 --update refresh-update-sites \ - && ImageJ-linux64 --update update \ - && ImageJ-linux64 --update list # Stage: itksnap (built with Ubuntu16.04 - glibc 2.23) FROM khanlab/itksnap:main as itksnap