diff --git a/README.md b/README.md index d914eb0..30fd02a 100755 --- a/README.md +++ b/README.md @@ -137,18 +137,20 @@ regarding documentations! ## References -If you are cytomulating in your workflow, citing [our paper](https://doi.org/10.1101/2022.06.14.496200) is appreciated: +If you are cytomulating in your workflow, citing [our paper](https://doi.org/10.1186/s13059-023-03099-1) is appreciated: ``` -@article {Yang2022.06.14.496200, - author = {Yang, Yuqiu and Wang, Kaiwen and Lu, Zeyu and Wang, Tao and Wang, Xinlei}, - title = {Cytomulate: Accurate and Efficient Simulation of CyTOF data}, - elocation-id = {2022.06.14.496200}, - year = {2022}, - doi = {10.1101/2022.06.14.496200}, - publisher = {Cold Spring Harbor Laboratory}, - URL = {https://www.biorxiv.org/content/early/2022/06/16/2022.06.14.496200}, - eprint = {https://www.biorxiv.org/content/early/2022/06/16/2022.06.14.496200.full.pdf}, - journal = {bioRxiv} +@article{Yang2023, + title = {Cytomulate: accurate and efficient simulation of CyTOF data}, + volume = {24}, + ISSN = {1474-760X}, + url = {http://dx.doi.org/10.1186/s13059-023-03099-1}, + DOI = {10.1186/s13059-023-03099-1}, + number = {1}, + journal = {Genome Biology}, + publisher = {Springer Science and Business Media LLC}, + author = {Yang, Yuqiu and Wang, Kaiwen and Lu, Zeyu and Wang, Tao and Wang, Xinlei}, + year = {2023}, + month = nov } ``` \ No newline at end of file diff --git a/cytomulate/__init__.py b/cytomulate/__init__.py index 032bcc0..9e0e66d 100755 --- a/cytomulate/__init__.py +++ b/cytomulate/__init__.py @@ -5,7 +5,7 @@ """ __version__ = "0.1.1" -__author__ = "Yuqiu Yang, Kevin Wang, Tao Wang, Sherry Wang" +__author__ = "Yuqiu Yang, Kevin Wang, Zeyu Lu, Tao Wang, Sherry Wang" from cytomulate.creation.cytof_data import CreationCytofData from cytomulate.emulation.cytof_data import EmulationCytofData \ No newline at end of file diff --git a/docs/source/index.rst b/docs/source/index.rst index 42f4ae0..abd9256 100644 --- a/docs/source/index.rst +++ b/docs/source/index.rst @@ -68,8 +68,8 @@ For more details, **read our tutorials and documentations linked below!** Or try :hidden: references - Our Paper - Dr. Xinlei (Shery) Wang + Our Paper + Dr. Xinlei (Sherry) Wang Dr. Tao Wang DBAI GitHub @@ -79,11 +79,11 @@ For more details, **read our tutorials and documentations linked below!** Or try Resources *********************** -For our paper, read our preprint `here `_. +For our paper, read our preprint `here `_. For more resources on our labs, collaborators, and related projects, please visit the following: - * `Dr. Xinlei (Shery) Wang faculty page `_ + * `Dr. Xinlei (Sherry) Wang faculty page `_ * `Dr. Tao Wang Lab `_ * `Database for Actionable Immunology (DBAI) for more computational immunology-related tools `_ diff --git a/docs/source/references.rst b/docs/source/references.rst index 6f04835..bdd657f 100644 --- a/docs/source/references.rst +++ b/docs/source/references.rst @@ -3,7 +3,7 @@ References ################ Here, you will find a list of relevant references. For a complete list, you can -read `our paper `_. +read `our paper `_. ----------------------- @@ -15,16 +15,18 @@ If you decide to cytomulate it in your package, citing our paper is highly appre .. code-block:: text - @article {Yang2022.06.14.496200, - author = {Yang, Yuqiu and Wang, Kaiwen and Lu, Zeyu and Wang, Tao and Wang, Xinlei}, - title = {Cytomulate: Accurate and Efficient Simulation of CyTOF data}, - elocation-id = {2022.06.14.496200}, - year = {2022}, - doi = {10.1101/2022.06.14.496200}, - publisher = {Cold Spring Harbor Laboratory}, - URL = {https://www.biorxiv.org/content/early/2022/06/16/2022.06.14.496200}, - eprint = {https://www.biorxiv.org/content/early/2022/06/16/2022.06.14.496200.full.pdf}, - journal = {bioRxiv} + @article{Yang2023, + title = {Cytomulate: accurate and efficient simulation of CyTOF data}, + volume = {24}, + ISSN = {1474-760X}, + url = {http://dx.doi.org/10.1186/s13059-023-03099-1}, + DOI = {10.1186/s13059-023-03099-1}, + number = {1}, + journal = {Genome Biology}, + publisher = {Springer Science and Business Media LLC}, + author = {Yang, Yuqiu and Wang, Kaiwen and Lu, Zeyu and Wang, Tao and Wang, Xinlei}, + year = {2023}, + month = nov } diff --git a/setup.py b/setup.py index 43fc8d9..b079466 100644 --- a/setup.py +++ b/setup.py @@ -58,8 +58,8 @@ def run(self): name = "cytomulate", version = VERSION, description = "Accurate and Efficient Simulation of CyTOF data", - author = "Yuqiu Yang, Kevin Wang, Tao Wang, Sherry Wang", - author_email = "yuqiuy@smu.edu, kevinwang@smu.edu, Tao.Wang@UTSouthwestern.edu, swang@smu.edu", + author = "Yuqiu Yang, Kevin Wang, Zeyu Lu, Tao Wang, Sherry Wang", + author_email = "yuqiuy@smu.edu, kevinwang@smu.edu, zeyul@smu.edu, Tao.Wang@UTSouthwestern.edu, xinlei.wang@uta.edu", long_description_content_type = "text/markdown", long_description = open("README.md").read(), packages=["cytomulate",