def run_script(self, script, files=[], conda_env=None, trial_run=False)

Run a script in the server directory in the conda_env, and wait for it to complete.

The files are copied and executed in LocalThreadServer.directory directly (whereas LocalThreadJob scripts are executed in subdirectories).

This is useful for short installation/setup scripts that do not belong in the scheduled job.

The resulting script and files are copied to LocalThreadServer.directory and then script is executed.

Arguments

script (string or list): shell script to run in the server directory, including any necessary installation steps. Note that the script can call any other scripts in files. If a string, must be the path of a valid file which will be copied to the server. If a list, must be a list of commands (i.e. a newline will be placed between each item in the list and sent as a single script to the server).
files (list, optional, default=[]): list of paths to additional files to copy to the server directory required in order to successfully execute script.
conda_env (string or None, optional, default=None): name of the conda environment to run the script or False to not use a conda environment. If not passed or None, will default to 'default' if conda is installed on the server or to False otherwise.
trial_run (bool, optional, default=False): if True, the commands that would be sent to the server are returned but not executed.

Returns