def submit_script(self, script, files=[], ignore_files=[], wait_for_job_status=False, trial_run=False)

Submit a script to the server in the LocalThreadJob.conda_env.

This will copy script and files to LocalThreadJob.remote_directory in the server directory and run in a thread. To check on its status, see LocalThreadJob.job_status.

To check on any expected output files, call LocalThreadJob.check_output.

See LocalThreadJob.run_script to run a script and wait for it to complete.

Arguments

script (string or list): shell script to run in the server directory, including any necessary installation steps. Note that the script can call any other scripts in files. If a string, must be the path of a valid file which will be copied to the server. If a list, must be a list of commands (i.e. a newline will be placed between each item in the list and sent as a single script to the server).
files (list, optional, default=[]): list of paths to additional files to copy to the server required in order to successfully execute script.
ignore_files (list, optional, default=[]): list of filenames in the server directory to ignore when calling LocalThreadJob.check_output
wait_for_job_status (bool or string or list, optional, default=False): Whether to wait for a specific job_status. If True, will default to 'complete'. See also LocalThreadJob.wait_for_job_status.
trial_run (bool, optional, default=False): if True, the commands that would be sent to the server are returned but not executed.

Returns

ValueError: if a script has already been submitted within this LocalThreadJob instance.
TypeError: if script or files are not valid types.
ValueError: if the files referened by script or files are not valid.